BAC Information

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BAC

Clone NameMSMg01-126D21
Chromosome1 (Build37)
Map Location 60,352,026 - 60,352,392
singlet/doubletsinglet
Overlap geneNbeal1
Upstream geneAls2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf
Downstream geneCyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126D21.T7 (MSMg01no126_d21.b1)MSMg01-126D21.TJ (MSMg01no126_d21.g1)
ACCAG335112AG335113
length689689
length of high quality
(start - end)
379 (46 - 424)312 (75 - 386)
definitionCHROMAT_FILE: MSMg01no126_d21.b1 PHD_FILE: MSMg01no126_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:32 2005CHROMAT_FILE: MSMg01no126_d21.g1 PHD_FILE: MSMg01no126_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTATAATACGCATTTTATTTATCTTCTGTGTATATGTGGACAT
GCATATGTTACAGTGCATGTGTGGGGGGTCAACAGACAACTTGCAGGAGT
CAGTTCTCTTCCGTCTACCGTGCTGACGTGGGAGGCCATCAGGCCATCAG
GCTTGGCAGCAGGCAGGCACCTTTACCCACTGAGGCATTTCACTGGCCTA
GCTATCGGTCTACATAAGGGCAGCCATGAATTTTATTCACTTTTGGATTT
TTAAGCACTCAGAAGTATATCAAACTTGGCAGATGTTTAATAAATATTTG
GTAAAATTAATGAAACACTTAACATTCAAATTTTATAATACAGTATAATA
TTTAATTTGCGAAACAAGACATCAAAATTAAAAAGTAATTATAGATAATC
AAATCAAGTTATAGACATGACTGTATAATTTACAAGTAATTATTTTTCTT
ATTTTTCATGTCCGAGACAAATAATTAAGTATATTAATGTTAATTAAATA
TACTGACAATATATTAAAAATTCACTATTCCATGGACACAATCAAAATGT
GTAAGAGGTATCTTTTCCAAAGGGATTCTTGCCAGCCCTGGTAACACATA
CCTGCCATCCTACTGCCTACTGCTGATGAGAGTTCTACC
NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCTCCTTCCTTCCTTGCTTCCTTC
CTTCCTTCCTTCCTTCCTTCGTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCGTCCCTCCTTGCCTCCTTGCCTCCTTCCCTCCTTGCCTCCGTCCCTC
CTTCGCTCCTTCCCTCCTTCCCTCCTTCCGTCCTTCCCTCCTTTCCTCCT
TCCCTCCTTCCCTCCGTCCCTCTCTCTTTGTAGGACTGGGGATAGAATTC
AGGGCCTTGAGCATGCTAGGCAAGTGCTATGTCCCCGAGCTACATTTAAC
CCCTACTGTCAAATTTTGAAACCTCCTTTCTTGGACAGAAAGAGAAATCT
AATTTTTGGGATCTAAATTAAAGCATCATTGCTCTTAAGATTTAATTTTG
TGTTTCAAAAAGGAGTTGTATAAAATGTGATTTTTTTAAAAAAAAAAAAA
CACTTTATCAGTTCATGGATAAAATACTTGTTAGGCAATAAGTTCTGCAC
TTGAATCAGGTAGGTACCAAGTGTAGCGTTCACAGATTAAACCCACCTCC
CTGCCGAGGATGCTAACGCATCAGTGATCCCTGAACTTTAAATGGAGTCT
CTGAGAATTAGTTTCTTCTCAAGCAGATAGACCCCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_d21.b1 MSMg01no126_d21.b1 CHROMAT_FILE:
MSMg01no126_d21.b1 PHD_FILE: MSMg01no126_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:32 2005
         (379 letters)



>mm_chr1_60351623_60352401
          Length = 779

 Score =  638 bits (330), Expect = 0.0
 Identities = 361/376 (96%), Gaps = 10/376 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctt-ataatacgcattttatttatcttctgtgtatatgtggacatgcatatgt 63
           |||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gaattctcttaaaaataagcattttatttatcttctgtgtatatgtggacatgcatatgt 711

                                                                       
Query: 64  tacagtgcatgtgtggggggtcaacagacaacttgcaggagtcagttctcttccgtctac 123
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tacagtgcatgtgt-gggggtcaacagacaacttgcaggagtcagttctcttccgtctac 652

                                                                       
Query: 124 cgtgctgacgtgggaggccatcaggccatcaggcttggcagcaggcaggcacctttaccc 183
           ||||||||||||||        ||||||||||||||||||||||||||||||||||||||
Sbjct: 651 cgtgctgacgtggg--------aggccatcaggcttggcagcaggcaggcacctttaccc 600

                                                                       
Query: 184 actgaggcatttcactggcctagctatcggtctacataagggcagccatgaattttattc 243
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 599 actgaggcatttcactggcctagctatcggtctccataagggcagccatgaattttattc 540

                                                                       
Query: 244 acttttggatttttaagcactcagaagtatatcaaacttggcagatgtttaataaatatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 acttttggatttttaagcactcagaagtatatcaaacttggcagatgtttaataaatatt 480

                                                                       
Query: 304 tggtaaaattaatgaaacacttaacattcaaattttataatacagtataatatttaattt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 479 tggtaaaattaatgaaacacttaacattcaaattttataatacagtataatatttaattc 420

                           
Query: 364 gcgaaacaagacatca 379
           | ||||||||||||||
Sbjct: 419 gtgaaacaagacatca 404


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)