BAC Information

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BAC

Clone NameMSMg01-126L02
Chromosome1 (Build37)
Map Location 93,528,037 - 93,652,052
singlet/doubletdoublet
Overlap genenone
Upstream geneCol6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1
Downstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126L02.T7 (MSMg01no126_l02.b1)MSMg01-126L02.TJ (MSMg01no126_l02.g1)
ACCAG335439AG335440
length702704
length of high quality
(start - end)
250 (50 - 299)312 (78 - 389)
definitionCHROMAT_FILE: MSMg01no126_l02.b1 PHD_FILE: MSMg01no126_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:10 2005CHROMAT_FILE: MSMg01no126_l02.g1 PHD_FILE: MSMg01no126_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,528,037 - 93,528,286)(93,651,741 - 93,652,052)
sequence
CTAAATTTGCGGCGCTAAACGACTCCTATTTCCAGAGATGCGCGGAATTA
CTTTGCTCTTCCCTCCCTTGGCCAAGTCACAATCTCTCTACCCTTCTCAG
AATCACCTTGGGGATTTCTGGACTCTCCATTGTCCCCTTTACCCTCCCTG
CTCAGCGCCCTTCCCAGGCTTTCTCTGACTCAGACATTGCTGTTTTTCCA
GGAGGATATGAGAATGTGAGTTCCTTCTGGGTTTGCAGACTGAATTGTGG
CTAGAGCCCACATCAGCACCAGTGTGCAGATGATTGGTCCTGACATAGCT
GGGGTCCTCCAGTGATGGTCACAGGTCTAGGTGCCCCATGGTGCAATCGT
TTGGAAAGTTTTGATTCTATCTATTGATGGGTTAATCTTCCATTTTATCT
ATGTATCTATCTATGTATCTATCTATGTATCTATCTATGTATCTATCTAT
CTACCTATCTATCTACCTATCCATCCATCTATCTATCTATCTATTTATCC
ATCAATCTATCTATCCACCTATCCTTCTTACTATCTATCTACCTATCTAT
CCAAGGATTCCACTTTTACCTTTTTTTGTTTTGCCTTCGTGCCGCTATTC
ACATCTTTTCACTTTCCCCCTGGTTCGGTCATACCCCCTTCCGCGCAATT
CAGGCTGTTTCTCCGGAATTCACAAATGCGTCAAACATTTTCCGTAGTTT
TT
AATCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATTTTTAAAATCTGAGGTTAGT
GGTTAGTGTTATTTCCTTACTGCAGAGGACAGTACTGCATCCTCTGTGTC
GTGGCATCTCTCTGGCTTGCCCCTGCATGTGCTCACACATGTGGAAAGAA
GAGGTTCTGTTGAGCCTTTTCCTAATAGAGAACACATTGTCCACTTGCCT
TTGAAGTCTTTCATCTGCGGCAAGACCACAAGGGGGCGATGCTCGCCGGA
ATCTTCCAGCATGACGCTGAGTACCTCCTTCAAGGAGGGGGTTTTGTTCT
TTCCTCCGAGTTTGGTAGGGTCTTGTCCCTGGAGGCTCCAGGGTGGTCGG
GGGAGTTCCCACGTTTTTTCAAGGGTTGTGCATTCATGGGGGGGGGGTGC
GGCTGGAGAACGGAGACAATTCAAAACCATAATATTTGCTATCGCCCAAC
AGACTTCACTAAACAATGAAACAATGATTTCACGCCAGGTACTTGATTAT
GCTGGAAGGAAGAATTAAACAGGTCCTGCTAACCAGTTTATAGTCTTGCC
TCTCCAAGGTAGGCCCATATCTGCTCCTTTTTTAAACCTATTAGCACGTT
TGGCTCCCTTACTACTGGGCTTTGATGCCCCCCTCCGTGTGTCCTTCCGA
AAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_l02.b1 MSMg01no126_l02.b1 CHROMAT_FILE:
MSMg01no126_l02.b1 PHD_FILE: MSMg01no126_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:10 2005
         (250 letters)



>mm_chr1_93527837_93528486
          Length = 650

 Score =  460 bits (238), Expect = e-134
 Identities = 247/250 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgctcttccctcccttggccaagtcacaatctctctacccttctcagaatcacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgctcttccctcccttggccaagtcacaatctctctacccttctcagaatcacctt 260

                                                                       
Query: 61  ggggatttctggactctccattgtcccctttaccctccctgctcagcgcccttcccaggc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggacttctggactctccattgtcccctttaccctccctgctcagcgcccttcccaggc 320

                                                                       
Query: 121 tttctctgactcagacattgctgtttttccaggaggatatgagaatgtgagttccttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctctgactcagacattgctgtttttccaggaggatatgagaatgtgagttccttctg 380

                                                                       
Query: 181 ggtttgcagactgaattgtggctagagcccacatcagcaccagtgtgcagatgattggtc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 ggtttgcagactgaattgtggctagagcccacatcagcaccagtgtgcagatgactggtc 440

                     
Query: 241 ctgacatagc 250
           ||| ||||||
Sbjct: 441 ctggcatagc 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no126_l02.g1 MSMg01no126_l02.g1 CHROMAT_FILE:
MSMg01no126_l02.g1 PHD_FILE: MSMg01no126_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:10 2005
         (312 letters)



>mm_chr1_93651541_93652252
          Length = 712

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttttaaaatctgaggttagtggttagtgttatttccttactgcagaggacagtactg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 512 catttttaaaatctgaggttagtggttagtgtgatttccttactgcagaggacagtactg 453

                                                                       
Query: 61  catcctctgtgtcgtggcatctctctggcttgcccctgcatgtgctcacacatgtggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 catcctctgtgtcgtggcatctctctggcttgcccctgcatgtgctcacacatgtggaaa 393

                                                                       
Query: 121 gaagaggttctgttgagccttttcctaatagagaacacattgtccacttgcctttgaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gaagaggttctgttgagccttttcctaatagagaacacattgtccacttgcctttgaagt 333

                                                                       
Query: 181 ctttcatctgcggcaagaccacaagggggcgatgctcgccggaatcttccagcatgacgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctttcatctgcggcaagaccacaagggggcgatgctcgccggaatcttccagcatgacgc 273

                                                                       
Query: 241 tgagtacctccttcaaggagggggttttgttctttcctccgagtttggtagggtcttgtc 300
           |||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 272 tgagcacctccttcaaggagggggctttgttctttcctcggagtttggtagggtcttgtc 213

                       
Query: 301 cctggaggctcc 312
           ||||||||||||
Sbjct: 212 cctggaggctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)