BAC Information

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BAC

Clone NameMSMg01-126L14
Chromosome1 (Build37)
Map Location 162,439,175 - 162,547,077
singlet/doubletdoublet
Overlap geneRabgap1l, Gpr52
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp
Downstream geneEG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126L14.T7 (MSMg01no126_l14.b1)MSMg01-126L14.TJ (MSMg01no126_l14.g1)
ACCAG335462AG335463
length709706
length of high quality
(start - end)
334 (124 - 457)580 (70 - 649)
definitionCHROMAT_FILE: MSMg01no126_l14.b1 PHD_FILE: MSMg01no126_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:13 2005CHROMAT_FILE: MSMg01no126_l14.g1 PHD_FILE: MSMg01no126_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,439,175 - 162,439,472)(162,546,633 - 162,547,077)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGATCCGCGGA
ATTCTGCAATGCCCCTAGAGATAATGAAAATCTAAGGAAGTCAAAGCCCT
CAAATGAAAGAAGGTGGGATAGTGTGTTGCTGTGTAGGGAGACACAGTCA
TTTATAAGAGTGGAAATGGAAAGTATTAGGAAACGCCATGCTTTGTTGTA
TGTCTCAAGAGCTGAAGGTCTAAGGGGCTGGAAAGACCTAGCAGTTCGAA
ACACTTGCTGCTCTTCCAGAGGACTTGAGTTTCCAGCACCTTTCTGTAGT
GGCCTATAACCTCATATAACTCCTACTCCATAGAACCCAAATATGTGTGA
CAGACACATAGGCACAAACACATACACACACACATATATAGATATATAGA
TGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAGATAAAGATGCCTCCTACTCTGCACATAATTGCTCACACACCCTTTG
TGCTTTATTTTCAATAGATTCCCCAAAATCCTATCAGGCTGGCCCATACT
GGTTGATTTGTTTTACGTTTTTGCCCTTCCTTACTAATCTCTCTATTAAT
CACCTCTGTTTTCCGATCGTTTTTAGCCCTATTCTGTGACTAATTACCAT
TCCTCTTCCTTTCCTTCTGTGCTCTCCCCTCGTTTCCCTCTCCTTTTTCC
TCCTCTCCC
TAATTGGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTGTTTTTTTTTTTTTACCCGTAGATGAATA
TTTTGCTCTAAAAGTACATATACATAAATATACAAGTAATGTTTCTGTTC
AAAGAATTTGTTTTATGACTCTGAGTCACTCATCTCTTTGGAAGAGAGTT
TTGATCTTATGAGCCTCTGGTATTTATAGATTAGGCATGGTCATAGCTGC
TGCTGGGATTATGCAAATTAAAATGATGAAATGCTTATCATATAGTAAGT
ACTCAAGATTCATCTCTGTATCCACATGCATAAAGCAGAGATGAATGCTG
GTGTCAGCTCTATTTTCTTTTATATTTAGTCATTGACTCTAGCCTATACA
CTGGAGCAGCTCCCCATTCAGGGCAGGTCCTGTCCTAAATAAACTTCTCT
AGAAACATGTGCAGCCACGTGCAGAGGTAGTTTCCATGGGGATTCTAAAT
CCTGTCAAGTTGATAACAATGATCAACCATCCATGGTGCATCCTCCCTTC
TGCTCTCCTGCCCCCCCCCCCGACACTTTCTTTTGCTTCCTTCCTTTCTT
TCTACCATTTTTCTTTTCCCCCTTTCCTTTTATGATAGTGGAGCTTGCAC
CCATGTTAATAAGCATTTTTATTAACATCCCAACCCATTTTTGCTTTATT
TTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_l14.b1 MSMg01no126_l14.b1 CHROMAT_FILE:
MSMg01no126_l14.b1 PHD_FILE: MSMg01no126_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:13 2005
         (334 letters)



>mm_chr1_162438975_162439708
          Length = 734

 Score =  522 bits (270), Expect = e-152
 Identities = 291/298 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgttgctgtgtagggagacacagtcatttataagagtggaaatggaaagtattaggaaa 60
           ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 gtgttactgtgtagggagacacagtcatttagaagagtggaaatggaaagtattaggaaa 260

                                                                       
Query: 61  cgccatgctttgttgtatgtctcaagagctgaaggtctaaggggctggaaagacctagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgccatgctttgttgtatgtctcaagagctgaaggtctaaggggctggaaagacctagca 320

                                                                       
Query: 121 gttcgaaacacttgctgctcttccagaggacttgagtttccagcacctttctgtagtggc 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcgcaacacttgctgctcttccagaggacttgagtttccagcacctttctgtagtggc 380

                                                                       
Query: 181 ctataacctcatataactcctactccatagaacccaaatatgtgtgacagacacataggc 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 ctataacctcatataactccaactccatagaacccaaatatgtgtgacagacacaaaggc 440

                                                                     
Query: 241 acaaacacatacacacacacatatatagatatatagatgatagatagatagatagata 298
           ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 acaaacacatacacacacatatatatagatatatagatgattgatagatagatagata 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no126_l14.g1 MSMg01no126_l14.g1 CHROMAT_FILE:
MSMg01no126_l14.g1 PHD_FILE: MSMg01no126_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:13 2005
         (580 letters)



>mm_chr1_162546633_162547612
          Length = 980

 Score =  830 bits (429), Expect = 0.0
 Identities = 441/445 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   tttttttttttttacccgtagatgaatattttgctctaaaagtacatatacataaatata 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttttttttttttacccgtagatgaatattttgctctaaaagtacatatacataaatata 386

                                                                       
Query: 64  caagtaatgtttctgttcaaagaatttgttttatgactctgagtcactcatctctttgga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caagtaatgtttctgttcaaagaatttgttttatgactctgagtcactcatctctttgga 326

                                                                       
Query: 124 agagagttttgatcttatgagcctctggtatttatagattaggcatggtcatagctgctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agagagttttgatcttatgagcctctggtatttatagattaggcatggtcatagctgctg 266

                                                                       
Query: 184 ctgggattatgcaaattaaaatgatgaaatgcttatcatatagtaagtactcaagattca 243
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgggattatgcaaattaaagtgatgaaatgcttatcatatagtaagtactcaagattca 206

                                                                       
Query: 244 tctctgtatccacatgcataaagcagagatgaatgctggtgtcagctctattttctttta 303
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tcgctgtatccacatgcataaagcagagatgaatgctggtgtcagctctattttctttta 146

                                                                       
Query: 304 tatttagtcattgactctagcctatacactggagcagctccccattcagggcaggtcctg 363
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 145 tatttagtcattgactctagcctgtacactggagcagctccccattcagggcaggtcctg 86

                                                                       
Query: 364 tcctaaataaacttctctagaaacatgtgcagccacgtgcagaggtagtttccatgggga 423
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  tcttaaataaacttctctagaaacatgtgcagccacgtgcagaggtagtttccatgggga 26

                                    
Query: 424 ttctaaatcctgtcaagttgataac 448
           |||||||||||||||||||||||||
Sbjct: 25  ttctaaatcctgtcaagttgataac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)