BAC Information

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BAC

Clone NameMSMg01-127D14
Chromosome1 (Build37)
Map Location 19,691,023 - 19,867,596
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1, Il17a, Il17f, Mcm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127D14.T7 (MSMg01no127_d14.b1)MSMg01-127D14.TJ (MSMg01no127_d14.g1)
ACCAG335828AG335829
length716680
length of high quality
(start - end)
110 (190 - 299)456 (80 - 535)
definitionCHROMAT_FILE: MSMg01no127_d14.b1 PHD_FILE: MSMg01no127_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:54 2005CHROMAT_FILE: MSMg01no127_d14.g1 PHD_FILE: MSMg01no127_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,691,023 - 19,691,132)(19,867,141 - 19,867,596)
sequence
GTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTTTTCTTTTCCTCAACCCTGTGAACTATTACTCTTACAGA
TGAAATGTGATATGTGGCTCTATAATACCCTTTAAAACACACAGCTGCTA
ACACATGAAGATGACAAGATATTACGTCAAAACTAAGAAATTTGTTGAAT
ATCATGTTCTTTGCCCAGCCATGAAAAATATCTCAGAGAATGATATTTAG
GATGCCTCAAATTGCTAACGAATCAAGTGTAATTCTAAGCATTGATTAGA
CAATTGTAACTCACTTCAAGGGAGGCTCAAATAATGCTTTGGAGAACGTT
AATTTCAGTTCTTTTTTGTCCTATACCCTATCTAATGATAATCAAGTCCT
GATCCAAACTTTTTCCTCCACCCCTACTTTAAATATTTGAACGTTCAACA
AAAAAATCATAGCTGTTTTTGCATAGAAAACTATGAAAAGACACTCTATT
TTCTAAAACACTGAAGCTTACATTTTTTTTTAAATTTAAATGTCCTTTCA
AATGCATCCATCCCTCTCTTTCCTTTCCTTCCCCACTATCCCATATCCCT
TAGCTTTCTAATAAATTTTCCAAACATTTTTTTTTGAACTCTCCTATTTT
ATTTGACCTCGCAGCCCGCTCCCGACTTTGACCGGTGGCGACCTGTCCCA
CGTCTACCAAATAACC
NTTTTTTCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAGAAGGTCACTTTCATG
GTATGTCCACAAGATGCTGAGCAACATTTCCATCAACCACATACTCAGCT
CAGCAGTTTCTGCTTGCATCACATGCCCTCGATCTTGCCTGGGAGGGATG
TCGGGGTGGATCGAGGCAGGGGGAAGTGGAAGACAGATATGAGTCAACTC
ATGAGAGATGGCTTGTCATTCTAATTTGACATAAAACTTAAATGTGCAAA
TTTTACATTCATATAATATAGTCATCTTGACTAGAATTCTTTTATTTTTA
ATTGGATATTTTCTATATTTACAACTTAAATGTGATGTTATCTCCTTTCC
CAGTGCCCCCCCCCCACTGCCCCGCAAAATCCCTATCCCATCCTCTCTCC
CGGGCTTCTATGAGGGTGTTCCCCCACCCACTCACTCCTACCTCCCTGAC
CTGGCATTCCCCTACACTGGGGAATTGAGCCTTCACAGGATCAAGGGCCT
CTCCTCCCATTGATGCCTGAAAAGGTCATCTTCTGTTACACATGCTGCTG
GAGCTCTTGAGTCCTCCATGGTTGGTGGTTTAGTCCCTGGTAGCATTGGC
CTTTGTTCTGCCTTTCTTCATCTCTCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_d14.b1 MSMg01no127_d14.b1 CHROMAT_FILE:
MSMg01no127_d14.b1 PHD_FILE: MSMg01no127_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:54 2005
         (110 letters)



>mm_chr1_19690823_19691332
          Length = 510

 Score =  197 bits (102), Expect = 1e-55
 Identities = 108/110 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgttgaatatcatgttctttgcccagccatgaaaaatatctcagagaatgatattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgttgaatatcatgttctttgcccagccatgaaaaatatctcagagaatgatattta 260

                                                             
Query: 61  ggatgcctcaaattgctaacgaatcaagtgtaattctaagcattgattag 110
           |||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 261 ggatgcctcaaactgctaacgaatcaagtgtaattctaagtattgattag 310


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 510
Length adjustment: 8
Effective length of query: 102
Effective length of database: 502
Effective search space:    51204
Effective search space used:    51204
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
Query= MSMg01no127_d14.g1 MSMg01no127_d14.g1 CHROMAT_FILE:
MSMg01no127_d14.g1 PHD_FILE: MSMg01no127_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:54 2005
         (456 letters)



>mm_chr1_19867137_19867992
          Length = 856

 Score =  874 bits (452), Expect = 0.0
 Identities = 455/456 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggagaaggtcactttcatggtatgtccacaagatgctgagcaacatttccatcaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 caggagaaggtcactttcatggtatgtccacaagatgctgagcaacatttccatcaacca 401

                                                                       
Query: 61  catactcagctcagcagtttctgcttgcatcacatgccctcgatcttgcctgggagggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 catactcagctcagcagtttctgcttgcatcacatgccctcgatcttgcctgggagggat 341

                                                                       
Query: 121 gtcggggtggatcgaggcagggggaagtggaagacagatatgagtcaactcatgagagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gtcggggtggatcgaggcagggggaagtggaagacagatatgagtcaactcatgagagat 281

                                                                       
Query: 181 ggcttgtcattctaatttgacataaaacttaaatgtgcaaattttacattcatataatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ggcttgtcattctaatttgacataaaacttaaatgtgcaaattttacattcatataatat 221

                                                                       
Query: 241 agtcatcttgactagaattcttttatttttaattggatattttctatatttacaacttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 agtcatcttgactagaattcttttatttttaattggatattttctatatttacaacttaa 161

                                                                       
Query: 301 atgtgatgttatctcctttcccagtgccccccccccactgccccgcaaaatccctatccc 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 160 atgtgatgttatctcctttcccagtcccccccccccactgccccgcaaaatccctatccc 101

                                                                       
Query: 361 atcctctctcccgggcttctatgagggtgttcccccacccactcactcctacctccctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 atcctctctcccgggcttctatgagggtgttcccccacccactcactcctacctccctga 41

                                               
Query: 421 cctggcattcccctacactggggaattgagccttca 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 40  cctggcattcccctacactggggaattgagccttca 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)