Query= MSMg01no127_g09.b1 MSMg01no127_g09.b1 CHROMAT_FILE:
MSMg01no127_g09.b1 PHD_FILE: MSMg01no127_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:07 2005
(275 letters)
>mm_chr1_67444313_67444988
Length = 676
Score = 518 bits (268), Expect = e-151
Identities = 271/272 (99%), Gaps = 1/272 (0%)
Strand = Plus / Plus
Query: 5 gaattcggcatttcc-cagttgcaactactgatctcataccagcaacacagtagccaaca 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcggcatttccacagttgcaactactgatctcataccagcaacacagtagccaaca 264
Query: 64 tactcagacagagtgcatttgtttggagttccagggcgcctgtgagttcatgtctgtggt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tactcagacagagtgcatttgtttggagttccagggcgcctgtgagttcatgtctgtggt 324
Query: 124 tgctatgaaccacataccccgctgctggattttaggtcacttcctcagacctttcccttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgctatgaaccacataccccgctgctggattttaggtcacttcctcagacctttcccttt 384
Query: 184 ctctttcttcttccttttctcaccaacaccaaacatggttgtttcaatgaggtgggcttc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctctttcttcttccttttctcaccaacaccaaacatggttgtttcaatgaggtgggcttc 444
Query: 244 ggaagagatgaaagaatgagttgttttgagga 275
||||||||||||||||||||||||||||||||
Sbjct: 445 ggaagagatgaaagaatgagttgttttgagga 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 676
Length adjustment: 9
Effective length of query: 266
Effective length of database: 667
Effective search space: 177422
Effective search space used: 177422
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no127_g09.g1 MSMg01no127_g09.g1 CHROMAT_FILE:
MSMg01no127_g09.g1 PHD_FILE: MSMg01no127_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:07 2005
(384 letters)
>mm_chr1_67619985_67620768
Length = 784
Score = 698 bits (361), Expect = 0.0
Identities = 379/385 (98%), Gaps = 2/385 (0%)
Strand = Plus / Minus
Query: 1 tcctcttttcaa-aaaactattttgatgaaaagtgagcatacccacacaacatttctagc 59
|||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 456 tcctcttttcaacaaaactattttgatgaaaagtgagcatacccaga-aacatttctagc 398
Query: 60 catcatttttaactttttaactttcaggcaagggactgatgaccttgagctaaacatgcc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 catcatttttaactttttaactttcaggcaagggactgatgaccttgagctaaacatgcc 338
Query: 120 tcccaaatgtgtttgtcagttttctttcttaaatgatggctttacactgggcattctctc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcccaaatgtgtttgtcagttttctttcttaaatgatggctttacactgggcattctctc 278
Query: 180 aaatatgcctcttaaccgagcacacttagcaaaggcctggctgtaaagcgtttttctttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aaatatgcctcttaaccgagcacacttagcaaaggcctggctgtaaagcgtttttctttt 218
Query: 240 tgaatatgtgtaccttctgaggtggttacaatgagaaaggtccccatagactcttgtatt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tgaatatgtgtaccttctgaggtggttacaatgagaaaggtccccatagactcttgtatt 158
Query: 300 tgaatgctttgtcaacagttgatgaaactgtttggaaaccaccaggaggtgtggcctatt 359
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 157 tgaatgctttgtcaacagttgatgaaactgtttggaaactattaggaggtgtggcctatt 98
Query: 360 agaggaggtgtggtactggtgggtg 384
|||||||||||||||||||||||||
Sbjct: 97 agaggaggtgtggtactggtgggtg 73
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space: 290625
Effective search space used: 290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
