BAC Information

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BAC

Clone NameMSMg01-127H08
Chromosome1 (Build37)
Map Location 48,331,260 - 48,331,679
singlet/doubletsinglet
Overlap genenone
Upstream geneEG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127H08.T7 (MSMg01no127_h08.b1)MSMg01-127H08.TJ (MSMg01no127_h08.g1)
ACCAG335993AG335994
length866708
length of high quality
(start - end)
---420 (74 - 493)
definitionCHROMAT_FILE: MSMg01no127_h08.b1 PHD_FILE: MSMg01no127_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:12 2005CHROMAT_FILE: MSMg01no127_h08.g1 PHD_FILE: MSMg01no127_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCACAATTCGCGGCCGCTAAACGACCCGCANAATCGGNACCGCGCGAG
GAANNNNANAGATTTTTCTAGCACGAACGGAAGACGAGAAAGGAGAGAAG
CAGGGAGCACCGGCCACGCCTTCTCACCCCCCACATGAAAAAAATATTGT
CCGCCTCCGTAAATTCATCCTGCACTACACGCACCCTATACCGTTCCGCA
CACTCAGAGCACACCTGCGGGTATATACTCCCCCCCAGTATTTCCACCCC
ATTACCACCACGACCCCAGCGCTCTCTTTGTACCTCCCTTACTTGCGCTC
TGTTATTCCTCCCCGCCCCACCTCTACCGCCCTCAGCCATCCCGTCCCAC
ACCCACTTTTTTTTTCTTGCCCCGCGNGACCACCAAACCCGCCCNGAACA
CATTGCTTCTCACTCCCCCCACCTCGACCGTCTGTTCTCCTCTGGATCTC
GTTTTGTTGCCCCACCACTTTTTCTCCCTCTACATGCTTTTACTTCACCC
ATTACTCTCCCCCTTCATTCCTTGCTTCCCCCTGTTCCGCCTGTNTTTCC
CCTGTTCGCCTCCCGCCTTCGACTCTTGATCTGCACTACCTTTTGTTTCT
GTCACCATCCCCTCCCCCCTCCCCGTTTCGGCTTTTCTCCACGCCTCATG
TACTACTCCCACCCCAAACGTTTCTTTTTTCCTATTCTCCACCTTTTCCG
CCCCTTTCCACCCGCCCCACCCTCTCCCCACCTTTCTCCCACCGCCCTTA
TTTTTTACCCCCACCTCTCTTCTCATTATTCCCCCCTACACCCGACCCCC
TTCCGTCTTTATTTTTTCCCCCAGCTCGCCGTCACTTTTTCCCCCACACC
TCAATAACGTTTAACC
CAATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGAAATAACATGTTTCTGAAACAAG
GAATACTGGAGGCTTGGGATACCTACAGGTCAAAGATTAAATGCATGTCT
TTCACCTTGTGTGAATGTCCACTGAACACACCTTAAACATTGCAGCAAAG
GCAAGGAATTTCTGAATAGGAGTCCAGTAGTTCATAAATAAGATGCATAA
TGGAAAACACCAAATTTAAAAACATTCTAAATAGCAAAATAATCACCAAA
TTGGGAAGACAGCTCACAACATGTGAGATAGTATTAATAAAATATTCATG
TTACAAAAACACAGCGTATACAATATATGAACAATTAAAACATATATTCT
CTGATATGTGGAAGTTTGCCAAAAGAAAAATGAAAAAGAAATTGAATTAA
AATGTTAAATTCTTAATATGTGAAAGGAAGTAAATAATAGGGGGAGAAGC
AGATTTGAAAGTAATATACAGGCCGAGCAGTGGTGGTACATGCCTTTAAT
CCCAGCTCTTGGGAGGCAGAACCAGCCAGATTTCTGAGTTCAAGGACAGC
CTGGTCTACAGAGTGAGTTACAGGTCACTCAGAGCTACATAGAGAAACTC
TGTCTCATAAAACCATAAACCTAGCTTACTAACATCTACACTTTCACTAC
AAGAAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_h08.g1 MSMg01no127_h08.g1 CHROMAT_FILE:
MSMg01no127_h08.g1 PHD_FILE: MSMg01no127_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:12 2005
         (420 letters)



>mm_chr1_48331060_48331879
          Length = 820

 Score =  789 bits (408), Expect = 0.0
 Identities = 417/420 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaaataacatgtttctgaaacaaggaatactggaggcttgggatacctacaggtcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgaaataacatgtttctgaaacaaggaatactggaggcttgggatacctacaggtcaa 260

                                                                       
Query: 61  agattaaatgcatgtctttcaccttgtgtgaatgtccactgaacacaccttaaacattgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agattaaatgcatgtctttcaccttgtgtgaatgtccactgaacacaccttaaacattgc 320

                                                                       
Query: 121 agcaaaggcaaggaatttctgaataggagtccagtagttcataaataagatgcataatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaaaggcaaggaatttctgaataggagtccagtagttcataaataagatgcataatgg 380

                                                                       
Query: 181 aaaacaccaaatttaaaaacattctaaatagcaaaataatcaccaaattgggaagacagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaacaccaaatttaaaaacattctaaatagcaaaataatcaccaaattgggaagacagc 440

                                                                       
Query: 241 tcacaacatgtgagatagtattaataaaatattcatgttacaaaaacacagcgtatacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcacaacatgtgagatagtattaataaaatattcatgttacaaaaacacagcgtatacaa 500

                                                                       
Query: 301 tatatgaacaattaaaacatatattctctgatatgtggaagtttgccaaaagaaaaatga 360
           ||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||
Sbjct: 501 tatatgaacaattaaaacatatagtctctgatatgtggaagtttgggaaaagaaaaatga 560

                                                                       
Query: 361 aaaagaaattgaattaaaatgttaaattcttaatatgtgaaaggaagtaaataatagggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaagaaattgaattaaaatgttaaattcttaatatgtgaaaggaagtaaataatagggg 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)