BAC Information

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BAC

Clone NameMSMg01-127J22
Chromosome1 (Build37)
Map Location 96,169,194 - 96,169,654
singlet/doubletsinglet
Overlap genenone
Upstream geneSned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012
Downstream geneLOC666025, LOC100040685, LOC383603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127J22.T7 (MSMg01no127_j22.b1)MSMg01-127J22.TJ (MSMg01no127_j22.g1)
ACCAG336108AG336109
length701692
length of high quality
(start - end)
296 (76 - 371)461 (78 - 538)
definitionCHROMAT_FILE: MSMg01no127_j22.b1 PHD_FILE: MSMg01no127_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:26 2005CHROMAT_FILE: MSMg01no127_j22.g1 PHD_FILE: MSMg01no127_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAGAACCG
CGGATTCTTTGTTCTTTCCCAACCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTTCACATTCTTGAGTTCCCATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCT
TTGTCTTATTGACGGTGTCTTTTGCCTTCCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGCCCTTATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCCGGTTTTATGTGAAGCTCTTTGATC
CATTTAGATTTGACCTCCCCCCCACGAGATAAGTATGGATCGATTCGCAT
TCTTCTACATGCTAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTAGATGGTTTTTAGCTCCCTTGTCGAATATCTAGTG
ACCATAGGTGTGTGGCTTCATTTCTGGGCCTTCTATTCTATTCCATTGGC
CTATTTGTCTGTCTCTATACCACCCCCATGCTGTTTTTACCACATTCGCT
CTGTACCACAGCTTTATGCCATGCCCGGCGATTCCACCAGATTTTCTTTT
A
NCACATGAAGTGGTAGGCTGGCGGCGCCTGGTTCAAAATAGAGGTGACCT
ATAGAAGTTCCCCGAAATTCACTGAACAAGCCAAAAAGAATAACCTAGAG
AACTGTGATCCAGTTAATAGAATAAAGTGCTAGCTCAAGATAACCCTATG
CCCACCTTGTACTCTTCTTTAAGAGCCTGAAAGAAGAAAGTCTCCTGATG
TTCTTAGCCATCCATGTCTATATCTAAAAACTTCTCCTTCATATCTCAAT
TCTCATGCCACAATCAATTCTCTGAGGAGATGCAAAGCAGCTGACTCCAG
TCAGCGTTAAACACGTACTTTCCATCAAGGTTGACCAAAGACCTAATTAT
TTCAGGCTTTGCACCTTGACAGGCTAAGCTAATTATTTGATTTGATTGCC
TGAGGGAATGACCCACGATTTGCCATGCTATCTCACTACAAGCAGCTTGG
AACAATTCAGCGAACTGTTTTAATGGCTTAATTACTGTGGTTCTTCAAAT
ATTGGAATTAACCAAAAATGAAAGTCATTTAAACTAACAAGCAGGTAAGG
GTGTTAGGACATCAGACAGTTGTATGAGAAATATTTATCACGTTGACTAA
ACATGGCTCCACAGTGAGACTCCACAATGAGTTTGGTTACTGGCACCTAC
AGTCCTTAATCAAATCTAAAGGCAACATGTGAACATATTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_j22.g1 MSMg01no127_j22.g1 CHROMAT_FILE:
MSMg01no127_j22.g1 PHD_FILE: MSMg01no127_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:26 2005
         (461 letters)



>mm_chr1_96168994_96169854
          Length = 861

 Score =  845 bits (437), Expect = 0.0
 Identities = 455/461 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagccaaaaagaataacctagagaactgtgatccagttaatagaataaagtgctagctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aagccaaaaagaataacctagagaactgtgatccagttaatagaataaagtgctagctca 602

                                                                       
Query: 61  agataaccctatgcccaccttgtactcttctttaagagcctgaaagaagaaagtctcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agataaccctatgcccaccttgtactcttctttaagagcctgaaagaagaaagtctcctg 542

                                                                       
Query: 121 atgttcttagccatccatgtctatatctaaaaacttctccttcatatctcaattctcatg 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atgttcttagctatccatgtctatatctaaaaacttctccttcatatctcaattctcatg 482

                                                                       
Query: 181 ccacaatcaattctctgaggagatgcaaagcagctgactccagtcagcgttaaacacgta 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctacaatcaattctctgaggagatgcaaagcagctgactccagtcagcgttaaacacgta 422

                                                                       
Query: 241 ctttccatcaaggttgaccaaagacctaattatttcaggctttgcaccttgacaggctaa 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctttccatcaaggttgaccaaagtcctaattatttcaggctttgcaccttgacaggctaa 362

                                                                       
Query: 301 gctaattatttgatttgattgcctgagggaatgacccacgatttgccatgctatctcact 360
           |||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||
Sbjct: 361 gctaattatttgatttgattgcctgagggaatgacagatgatttgccatgctatctcact 302

                                                                       
Query: 361 acaagcagcttggaacaattcagcgaactgttttaatggcttaattactgtggttcttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acaagcagcttggaacaattcagcgaactgttttaatggcttaattactgtggttcttca 242

                                                    
Query: 421 aatattggaattaaccaaaaatgaaagtcatttaaactaac 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatattggaattaaccaaaaatgaaagtcatttaaactaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)