BAC Information

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BAC

Clone NameMSMg01-127M09
Chromosome1 (Build37)
Map Location 154,975,724 - 154,975,965
singlet/doubletsinglet
Overlap geneLamc2
Upstream geneLOC668076, 5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2
Downstream geneLamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127M09.T7 (MSMg01no127_m09.b1)MSMg01-127M09.TJ (MSMg01no127_m09.g1)
ACCAG336221AG336222
length732705
length of high quality
(start - end)
79 (49 - 127)242 (70 - 311)
definitionCHROMAT_FILE: MSMg01no127_m09.b1 PHD_FILE: MSMg01no127_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:38 2005CHROMAT_FILE: MSMg01no127_m09.g1 PHD_FILE: MSMg01no127_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTTGGTTTCTCCCTGCTGGGAGCATGGCTGCATCCCCATTGTTCGGGC
AGCCCCCTCCCCTTCTCCATCTCTTCAGCCAGTATGGACTGTAGGATTCA
GAGTAGAACATATGAATTAATTTTGAGCGTTCCATTCTAAATATCTGCAC
TTGAGGGCTTTGTTTTAAGGGGAACATGTGGCAGGGCGAGGGAGAAGTGT
AGCATATCTCCCCGATGCTAACTATTTTTTGAAGCCCGTCTGTACGGTTG
CCTCGTCCTCTTATCCCCTGTCCCCATCCCTATGTTTCCCTATCTTTTCA
TTTCCTCTACTATTTGATCTGTTTCCTGCTTCTAGAAGACATTTTGTCTT
TGTTTTGATTTCCCCACCCCCCTTATGCAACGACTTCGTGCCCTTATCTT
TTACCCGTTTTTCCCTATCCCGCACTTATTTTCTACCCCCTTACTATTGC
TTCACTTACTCCCTTCCGTTCCTCCTCTCTTCCCTTCCGTTCTTCTTTTT
TACCCCCTTCCCCGCTTTTTTCCTTCTTTCTTCTCTGTTCCTTCTTCTTT
TTCTTCTTTCTCTCCTTTTCTTCTTTTCCCTTTCTTTTCCTCCTCTTCCC
TCCCTCCTTTTCATTTTTTCCCTCTCTTTCTTTTCCCTCTCTTATATCCT
CCACTCTTTTCCTCCTTTCTTCTCCCTTCTCT
TCATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCCTGGAGCTGTCAGGAGAAGTGGAGTCCT
GGGCGACTAGTTTCTCATCCTAACCTTCCGAACGGTGCAAAAGTCACTTC
TATTTTTCTAAGTATTTTCTGATAGCAGCCTTAGAAATCTTCATAGTAAA
CAACTCTGGGTGTTCTCCACAGTGCTGTTCAAAGGAACATGGAATATGGT
GTAATAGCTGCTAGCCAGTGATAGAATCCATCCAGCAGAAGGGTGGGCGC
ATAGAGCAGGGCTGCTGTGCCCTCTCCAGGACTCTGAGCCATAGGGGCTG
AACTGATCTGAAACACTCTCTCTCTGGAACAGGGCTGTGTTGTGCACTGC
CTGTTCCCCCCACCATATCCATTTCTCTTTACCTGCTCTATCTCGCTGCT
GATCTCCAGGGCCTCCCTAGTTGCGTTCTTTGCCCGTTGGGTGTCGGCAG
TGGAGCTCCCCAGGGTCGATTCTGCTTGCTGGTTCTTGTCACCGGCATTT
GCCACCTTCCGGCTAATATATTATAGTCTCCCTATGTTCCCTTCATCCTC
CGTCTTTTCCGTCTTTCTCTGCTTAACACACTCTTTAATCACTTATTCCC
AACTATTACACCTATTATTCATTGTCCCATACCTTACTCGATGAAATTGC
CCGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_m09.g1 MSMg01no127_m09.g1 CHROMAT_FILE:
MSMg01no127_m09.g1 PHD_FILE: MSMg01no127_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:38 2005
         (242 letters)



>mm_chr1_154975524_154976165
          Length = 642

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctggagctgtcaggagaagtggagtcctgggcgactagtttctcatcctaaccttcc 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tccctggagctgtcaggagaagtggagccctgggcgactagtttctcatcctaaccttcc 260

                                                                       
Query: 61  gaacggtgcaaaagtcacttctatttttctaagtattttctgatagcagccttagaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacggtgcaaaagtcacttctatttttctaagtattttctgatagcagccttagaaatc 320

                                                                       
Query: 121 ttcatagtaaacaactctgggtgttctccacagtgctgttcaaaggaacatggaatatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatagtaaacaactctgggtgttctccacagtgctgttcaaaggaacatggaatatgg 380

                                                                       
Query: 181 tgtaatagctgctagccagtgatagaatccatccagcagaagggtgggcgcatagagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 381 tgtaatagctgctagccagtgatagaatccatccagcagaagggtgggcgtgtagagcag 440

             
Query: 241 gg 242
           ||
Sbjct: 441 gg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)