BAC Information

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BAC

Clone NameMSMg01-127M12
Chromosome1 (Build37)
Map Location 159,577,421 - 159,577,665
singlet/doubletsinglet
Overlap genenone
Upstream geneAbl2, Tor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
Downstream gene6430517E21Rik, Astn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127M12.T7 (MSMg01no127_m12.b1)MSMg01-127M12.TJ (MSMg01no127_m12.g1)
ACCAG336227AG336228
length709719
length of high quality
(start - end)
245 (70 - 314)147 (78 - 224)
definitionCHROMAT_FILE: MSMg01no127_m12.b1 PHD_FILE: MSMg01no127_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:39 2005CHROMAT_FILE: MSMg01no127_m12.g1 PHD_FILE: MSMg01no127_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCGGCTTCCACCCCCTCAGTGACCTTTGGTATATGCACCAGAGTTGT
AAAGCATCCCTACAATCACCTTTGGAAACAATTAGGAATTTGGAAACCAT
TTATAACCAAACTTAAAATCAAATCTTGGAGATACTTCGTCACCCAAAAA
AGAAATACTGTATGCATTAACTGTGCATCTTCGTCTGCCCTAAGCCCTCC
ATGACCCCAGCCTTTAATCTATGTTCTGGATATTCCACATAGCATAACCG
TGAGAGGTGTGGTCTTTATGACAGAGCCCTTTCATGATATCATTTTCAGT
GTCAATCCTGCTATAGCACGCGTGTTGGTTAGTTTTCCTGTTGCTGTGAC
ATTTTTTCACCCCCCCCAAACTGAATAATGTAATGTCTATGTTGGTCTGA
AGCTTCATAACATGCACTCCGCCACTCGTCAGGATGCATGCAGAATGTCT
CTGCGTCTACCGGATAACTGAGTTGTTCACTTCTCACATGCTTATTCAGA
CCCACATTTACAGAGCTATATTGGAACTGTACTGCATTTTTTATTTGATT
TTTTCGATCTACTGCTTTTCAGTTAGGACTCACTTCCCATATATGCCCAC
TTCCTTTTCCTTTTACATTACCTCCTACTTGATCATTACGCATTCTTTCC
GGTTGTTAA
CTTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACAGGGACCCACCTGCCTCTGCT
TCCAGAGAGCTGGGGCTAAAGGACTGAGTCTCCACGCCCAGCTACAGTTG
GAGTTTTGACTATACTTAGTCTTTCATATTGGCTCTAATTTGTTCGCACC
CCCATCTGGTACATAAATTCTTGCATGTTAGGTCTGCGCATTTTATTCTT
TTCTATATCAGTGTTGCACGAATGGTCATTCAATCCCTGCTAATTGATTG
CTGGAGCACATTGCTGTAACTTTAGTTTCTTCAAAATCTATTTTTACTGA
CGCTTCTTATATGCTCTAACCGTTCTTGTAGCCCACTATTCACCAGAGAT
GTTGTAAAATTACCCCCCCCCCTTTTATGGACCTGCTTAGAAAGATTTTT
TGCTTTTCTCTCATCCATCTCTTTTCTCTCTCTCCTTTCCCTTCTCTCCC
CTCTCAATTAATTTTTCCACTTCTCTTCCACTCATTTCTTTCTTTTTCTT
TACTTTCTCCTCTCTTTTTTTCCACCATCCTTCCCCTTTCTTCTTTTTCT
CCCCCTTCTTTTCTCATCATCCTCTTTTTTTTCTTTCCCTTTTCCCTTCT
CTTACTTTTTCCCCTTCTTTTACCTTATCACCCACCCCCACTTTTCCATT
TCACCTTCCCCCCATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_m12.b1 MSMg01no127_m12.b1 CHROMAT_FILE:
MSMg01no127_m12.b1 PHD_FILE: MSMg01no127_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:39 2005
         (245 letters)



>mm_chr1_159577221_159577865
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtgacctttggtatatgcaccagagttgtaaagcatccctacaatcacctttggaaac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 445 cagtgacctttggtatatgcaccagagttgtaaagcatccctacaatcaattttggaaac 386

                                                                       
Query: 61  aattaggaatttggaaaccatttataaccaaacttaaaatcaaatcttggagatacttcg 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 385 aattaggaatttggaaaccatttagaaccaaacttaaaatcaaatcttggagatacttcg 326

                                                                       
Query: 121 tcacccaaaaaagaaatactgtatgcattaactgtgcatcttcgtctgccctaagccctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcacccaaaaaagaaatactgtatgcattaactgtgcatcttcgtctgccctaagccctc 266

                                                                       
Query: 181 catgaccccagcctttaatctatgttctggatattccacatagcataaccgtgagaggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 catgaccccagcctttaatctatgttctggatattccacatagcagaaccgtgagaggtg 206

                
Query: 241 tggtc 245
           |||||
Sbjct: 205 tggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)