Query= MSMg01no127_o23.b1 MSMg01no127_o23.b1 CHROMAT_FILE:
MSMg01no127_o23.b1 PHD_FILE: MSMg01no127_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:51 2005
(665 letters)
>mm_chr1_125803879_125804944
Length = 1066
Score = 1210 bits (626), Expect = 0.0
Identities = 653/662 (98%), Gaps = 3/662 (0%)
Strand = Plus / Plus
Query: 6 ggaattctttttaa-atcactattcttgcttaaa-agatattctactacttgcatcttaa 63
|||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 206 ggaattctttttaacatcattattcttgcttaaacagatattctactacttgcatcttaa 265
Query: 64 agactgaaacatttatctcactggctcttcagcctggttctgaacagtcaccagctgtcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agactgaaacatttatctcactggctcttcagcctggttctgaacagtcaccagctgtcc 325
Query: 124 taaaacaaaactccttgccttttatctcttctctgtatttactttcatgctccattaacc 183
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 326 taaaacaaaactccttgccttttatctcttctctgtatttactttcgtgctccattaacc 385
Query: 184 ttcccacgtgcttaattctgcaaatacaaacatggcattttctacaaaccaacccaataa 243
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 386 ttcccacgtgcttaattctgcaaatacaaacatggcatttcctacaaaccaacccaataa 445
Query: 244 aactccaaatcatttcatatggggcaacagatagtcccaactcattccctcttgagtagc 303
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 446 aactccaaatcatttcaaatggggcaacagattgtcccaactcattccctcttgagtagc 505
Query: 304 tgaatattttgaattattctgatttgaattgtttctattatattcacgctgttcacattt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgaatattttgaattattctgatttgaattgtttctattatattcacgctgttcacattt 565
Query: 364 tcaactgcaaatagattcaaggatgatttggtcacaagtagtccaagaacatttatactg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcaactgcaaatagattcaaggatgatttggtcacaagtagtccaagaacatttatactg 625
Query: 424 agttacatagatttaacgcatttgagattccttacatggagcgccaaaatgcagttggtt 483
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 626 agttacatagatttaacgcatt-gagattccttacatggagctccaaaatgcagttggtt 684
Query: 484 tgaatatcttaatgataaactcagaatcactaatattgctttggtgtcacattaaggaaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgaatatcttaatgataaactcagaatcactaatattgctttggtgtcacattaaggaaa 744
Query: 544 gaaatccaagccctttctggtgctggtcaactaagagcaagctgcgatttcgatacttta 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaaatccaagccctttctggtgctggtcaactaagagcaagctgcgatttcgatacttta 804
Query: 604 ttttactttacctgtgtcttccattgtccctgcctgtctattgtatgagtctgaatctgt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttttactttacctgtgtcttccattgtccctgcctgtctattgtatgagtctgaatctgt 864
Query: 664 tc 665
||
Sbjct: 865 tc 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1066
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1056
Effective search space: 691680
Effective search space used: 691680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no127_o23.g1 MSMg01no127_o23.g1 CHROMAT_FILE:
MSMg01no127_o23.g1 PHD_FILE: MSMg01no127_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:52 2005
(639 letters)
>mm_chr1_125851179_125852210
Length = 1032
Score = 1185 bits (613), Expect = 0.0
Identities = 627/635 (98%), Gaps = 7/635 (1%)
Strand = Plus / Minus
Query: 1 taatgtacattatattattcttaataaatgtcttatttagaatgtcttatttagaagtgt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 taatgtacattatattattcttaataaatgtcttatttagaatgtcttatttagaagtg- 570
Query: 61 tttttttttttctttttgaaaagcaaaactaaatcattgtgggaaggatgctgttaaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 --tttttttttctttttgaaaagcaaaactaaatcattgtgggaaggatgctgttaaagt 512
Query: 121 cagagcctctcctggagttcattaaattaggaaattaaaagtagaagaaactgacaaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cagagcctctcctggagttcattaaattaggaaattaaaagtagaagaaactgacaaggg 452
Query: 181 aattagggcctgctgtggaattattctcatagctaaccagggaagcaaaatggtgtcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aattagggcctgctgtggaattattctcatagctaaccagggaagcaaaatggtgtcaaa 392
Query: 241 gtcataattattatttgcccttgaagtagccttgctaatggaagtagaacagaggaaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gtcataattattatttgcccttgaagtagccttgctaatggaagtagaacagaggaaaat 332
Query: 301 gttgcatagaaatcctacctgaaaactattttcaaagctaatatatccaagctaccttac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gttgcatagaaatcctacctgaaaactattttcaaagctaatatatccaagctaccttac 272
Query: 361 cacaatgtaataaaaaggaagggctgtaggctctggtttgaaaaaaaaaaaggtttcaat 420
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 271 cacaatgtaataaaaaggaagggctgtaggctctggtttg----aaaaaaaggtttcaat 216
Query: 421 ttatagtataagtgcttatttgtatgtggataagtacgtatgtgtcaagattcttatggt 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 215 ttatagtataagtgcttatttgtgtgtggataagtacgtatgtgtcaagattcttatggt 156
Query: 481 gaccagaaaagggtattggattctttggagctggatgtacaggtgcttgtgtgccacatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 gaccagaaaagggtattggattctttggagctggatgtacaggtgcttgtgtgccacatg 96
Query: 541 gtatggctgttgctacacaataagaaagcaggctgagaaagccatgagaaacaagccaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 gtatggctgttgctacacaataagaaagcaggctgagaaagccatgagaaacaagccaga 36
Query: 601 aagtaagattcttccatggcttctgcttcagtttc 635
|||||||||||||||||||||||||||||||||||
Sbjct: 35 aagtaagattcttccatggcttctgcttcagtttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1032
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1022
Effective search space: 642838
Effective search space used: 642838
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
