Query= MSMg01no128_a01.b1 MSMg01no128_a01.b1 CHROMAT_FILE:
MSMg01no128_a01.b1 PHD_FILE: MSMg01no128_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:57 2005
(430 letters)
>mm_chr1_55685761_55686590
Length = 830
Score = 795 bits (411), Expect = 0.0
Identities = 420/423 (99%)
Strand = Plus / Minus
Query: 5 gaattcccagcttatccttccctgacaaacagggcaaatccttcagggagaaatccagaa 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gaattcccagcgtatccttccctgacaaacagggcaaatccttcagggagaaatccagaa 568
Query: 65 accagttaaaagatgcctatgcctcacataagcagccaagccaagcatatcaaagctcac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 accagttaaaagatgcctatgcctcacataagcagccaagccaagcatatcaaagctcac 508
Query: 125 tataaaaatgccaacgtgaaaactaattataaatggtggtagaaaaggaggtcacacgcg 184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tataaaaatgccagcgtgaaaactaattataaatggtggtagaaaaggaggtcacacgcg 448
Query: 185 ccatccattacataatgaaggacgtaacagagatgtcaaggaatagtttatatgtcgtaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ccatccattacataatgaaggacgtaacagagatgtcaaggaatagtttatatgtcgtaa 388
Query: 245 aaattttatagttatcatttaatatctttaattagatttcaatgaagacatttataaaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaattttatagttatcatttaatatctttaattagatttcaatgaagacatttataaaac 328
Query: 305 aaacagtataatgggagtcaaaacctgtcatgacaagaaaagtaatgggacacaaaggag 364
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 327 aaacagtataatgggagtcaaaacctgtcatgacaagaaaagtaatgggactcaaaggag 268
Query: 365 gatgggcagacagggggaagtggacaaaacaactccccaaacaccaaaatctgtaagcaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gatgggcagacagggggaagtggacaaaacaactccccaaacaccaaaatctgtaagcaa 208
Query: 425 gaa 427
|||
Sbjct: 207 gaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space: 345641
Effective search space used: 345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_a01.g1 MSMg01no128_a01.g1 CHROMAT_FILE:
MSMg01no128_a01.g1 PHD_FILE: MSMg01no128_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:57 2005
(369 letters)
>mm_chr1_55523780_55524547
Length = 768
Score = 536 bits (277), Expect = e-156
Identities = 286/289 (98%), Gaps = 1/289 (0%)
Strand = Plus / Plus
Query: 81 tggcatggactatttttcttgtgaacagtttggactggagacacagtgaacatgaggccc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tggcatggactatttttcttgtgaacagtttggactggagacacagtgaacatgaggccc 340
Query: 141 tgtgttccatcacgagacagacaagaggagtgtggaagaacaattgaaaaaaaaataggt 200
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 341 tgtgttccatcacgagacagacaagaggagtgtggaagaacaattg-aaaaaaaataggt 399
Query: 201 ggtaacgtttgggaaattctattataccccagaatttcctggccgagtatttagtaacag 260
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggtaacatttgggaaattctattataccccagaatttcctggccgagtatttagtaacag 459
Query: 261 gaaggattaatgtttttgagtgacagactacatgtctgcgatgccctctcttagactcta 320
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 460 gaaggattaatgtttttgagtgacagactacatgtctgccatgccctctcttagactcta 519
Query: 321 caaggtaagctgtaaaaacagttccagagaaaggctgtaattgacagac 369
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 caaggtaagctgtaaaaacagttccagagaaaggctgtaattgacagac 568
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 768
Length adjustment: 9
Effective length of query: 360
Effective length of database: 759
Effective search space: 273240
Effective search space used: 273240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
