BAC Information

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BAC

Clone NameMSMg01-128C19
Chromosome1 (Build37)
Map Location 4,637,482 - 4,637,920
singlet/doubletsinglet
Overlap genenone
Upstream geneXkr4, LOC619785, Rp1h, Sox17, LOC664830, LOC664838, LOC664853
Downstream geneLOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20, Atp6v1h, EG636659, Oprk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128C19.T7 (MSMg01no128_c19.b1)MSMg01-128C19.TJ (MSMg01no128_c19.g1)
ACCAG336516AG336517
length717715
length of high quality
(start - end)
439 (123 - 561)219 (121 - 339)
definitionCHROMAT_FILE: MSMg01no128_c19.b1 PHD_FILE: MSMg01no128_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:11 2005CHROMAT_FILE: MSMg01no128_c19.g1 PHD_FILE: MSMg01no128_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCGGAATTCA
ACCTGCTTTCCTCAAAACTAAAGATGCTGCAAAGAAGGATATACATCTCA
GTATACAGAGCTCTTGCCCACTGGCCACATTTCCAGGCAGTGAAGGACAA
CACCTTGTCACCCCAACACAGAAACAGAAGCCCCGTCAAGTACCACAAGT
AGAGAGTTTCAATCCAGTAAATTATTTAGCAGGACACAAACATTCCAATT
AGTTGCCGGACTAGAAGAAAACACTGTTGATGCTCAAAGTGACATAGGCA
ATAAGAGCTGCAGCAGACATCTGTCACCCCCAGGAACTGGGTGACCCAAG
GTAGTATTATCATAGCTTTGGAGCTTAGAGAAAGGGTTTCCCATTGCTGG
CTCTTTCACCATGAGGTAATGCTTGGTTAATGAAGGGGCGACACAGAGGG
GAAATAGAGAATTACAGTTTTCCCCACAGCTAGGTATTCATAGAAAGCAA
GGCCTTTAAGCTTTCTTCTTATTCCCGTGTCCTATTTGCTTCTCCTGGTA
GAAGCCTTTCAGAAGCCACTGGGAGGGTAATTTGTTGGTTGCCACCTGTG
TTTCTATGGTATAATAGAAACCTAGAAGCAGATGAGAATTACTGCACTCT
GTGGGCTTTAATGCTTGTGTCCTACTCAGACAGATTTTCTGTATAACGTG
GTTGCATCGCTTGTGCT
TAGAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGAGATGCCCCAACAGAAAATGGAGGCAC
CGGACTGGAGAGATGTCTCCTTTCTTTGAATTGTCGGTGTTAAGTGCTGG
TTGCTCTTCCTTCTAGAGGATCCAGGTGTGACTCCTAGCACCTACATGGC
AATTTATAACTGTATCTCCAGTTCCAGAGGACCTGACAGCCTCATACAGA
CATGCATGCAGGTAAAACAGACATACATGCAGGCAAAATGCCAATGCACT
TAAAATGAAAATAAATAAGTTATTTTAAAAATAAAGAACATGGAGATGGC
AAGAATCATGTGCATTCCTCTGCCGGCTTTCTGTGAATTTAGCAGGCGCT
AGATCTGGTATACAGAGAACAAATTTCCAATCCCGCCTCACTTCTGACAG
CCATTGCCGTCTGATGGGCACACATGAGGTAATTCTTTTCTCGCTCTAAC
AAGCTGGTATGTGTATTTTATCTGCCAACTGACTGAGTAACTACAATTAC
TAGCATGTTTTTCTAATGATTTATTATGCGCCTTACAAGGAGCATTAAAC
TGTTTAATAACAATCTGATTGCGTTCCTGACCTGTTTTCTTTGAATTGTC
ATGCATACTTTTCACTTATCTTCTGTTTCATTAATTTAGTGAATACGCCT
TCTGATTTATTTCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_c19.b1 MSMg01no128_c19.b1 CHROMAT_FILE:
MSMg01no128_c19.b1 PHD_FILE: MSMg01no128_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:11 2005
         (439 letters)



>mm_chr1_4637282_4638120
          Length = 839

 Score =  818 bits (423), Expect = 0.0
 Identities = 435/439 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggccacatttccaggcagtgaaggacaacaccttgtcaccccaacacagaaacagaagcc 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 639 ggccacatttccaggcagtgaaggacaacacctggtcaccccaacacagaaacagaagcc 580

                                                                       
Query: 61  ccgtcaagtaccacaagtagagagtttcaatccagtaaattatttagcaggacacaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ccgtcaagtaccacaagtagagagtttcaatccagtaaattatttagcaggacacaaaca 520

                                                                       
Query: 121 ttccaattagttgccggactagaagaaaacactgttgatgctcaaagtgacataggcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 519 ttccaattagttgccggactagaagaaaacactgttgatgctcaaagtgacctaggcaat 460

                                                                       
Query: 181 aagagctgcagcagacatctgtcacccccaggaactgggtgacccaaggtagtattatca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 459 aagagctgcagcagacatctgtcacccccaggaactgggtgacccaaggtagtattttca 400

                                                                       
Query: 241 tagctttggagcttagagaaagggtttcccattgctggctctttcaccatgaggtaatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tagctttggagcttagagaaagggtttcccattgctggctctttcaccatgaggtaatgc 340

                                                                       
Query: 301 ttggttaatgaaggggcgacacagaggggaaatagagaattacagttttccccacagcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttggttaatgaaggggcgacacagaggggaaatagagaattacagttttccccacagcta 280

                                                                       
Query: 361 ggtattcatagaaagcaaggcctttaagctttcttcttattcccgtgtcctatttgcttc 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ggcattcatagaaagcaaggcctttaagctttcttcttattcccgtgtcctatttgcttc 220

                              
Query: 421 tcctggtagaagcctttca 439
           |||||||||||||||||||
Sbjct: 219 tcctggtagaagcctttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)