Query= MSMg01no128_o15.b1 MSMg01no128_o15.b1 CHROMAT_FILE:
MSMg01no128_o15.b1 PHD_FILE: MSMg01no128_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:09 2005
(541 letters)
>mm_chr1_74537538_74538478
Length = 941
Score = 973 bits (503), Expect = 0.0
Identities = 529/541 (97%), Gaps = 7/541 (1%)
Strand = Plus / Plus
Query: 5 gaattctttctatt----tcccatataatgggttttgtttcataatgatattaacattac 60
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctttctattagttt---atataatgggttttgtttcataatgatattaacattac 260
Query: 61 atcacgtaggagaacaagcgtaggagaacctgcacagattaccaagaccctatttcaaat 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcacgtaggagaacaagtgtaggagaacctgcacagattaccaagaccctatttcaaat 320
Query: 121 gttaatgacattaacatatgattatgtgactcggcagttgagtgcttgcctagcatctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttaatgacattaacatatgattatgtgactcggcagttgagtgcttgcctagcatctgt 380
Query: 181 gaggctctgggttcaatccctagaacctcaagaagaaattactctgtgacatcactctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggctctgggttcaatccctagaacctcaagaagaaattactctgtgacatcactctag 440
Query: 241 ctagtattgttcctttgccatggagatcatttaatgttatagtctaagtgatcaattatc 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ctagtattgttcctttgccatggagatcatttaatgttagagtctaagtgatcaattatc 500
Query: 301 ttttgcatccagagattgttagaattcactcttctctttaaattaaattctatcatttta 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttgcatccagagactgttagaattcactcttctctttaaattaaattctatcatttta 560
Query: 361 ttttttaaaactcccaatgatgattcaaactttacttagacaaaagaaaagtatgatggg 420
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttttaaaactcaaaatgatgattcaaactttacttagacaaaagaaaagtatgatggg 620
Query: 421 tatgttagacaaaagcaaaacagaaatatagactgagttcccaatgtgtaagatcttaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatgttagacaaaagcaaaacagaaatatagactgagttcccaatgtgtaagatcttaaa 680
Query: 481 cagtgctatattcaaatgcttttttgagacaggatttttctagagtccaggctggcttta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagtgctatattcaaatgcttttttgagacaggatttttctagagtccaggctggcttta 740
Query: 541 a 541
|
Sbjct: 741 a 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_o15.g1 MSMg01no128_o15.g1 CHROMAT_FILE:
MSMg01no128_o15.g1 PHD_FILE: MSMg01no128_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:09 2005
(244 letters)
>mm_chr1_74621669_74622312
Length = 644
Score = 429 bits (222), Expect = e-125
Identities = 235/244 (96%), Gaps = 8/244 (3%)
Strand = Plus / Minus
Query: 1 cagaccagaacagataacttccttcataattcaagttttgggatagtctgttggaatagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cagaccagaacagataacttccttcataattcaagttttgggatagtctgttggaatagg 289
Query: 61 agaagggagaataatcaaccatccatatacattgtgactttacttagaactgaacaggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agaagggagaataatcaaccatccatatacattgtgactttacttagaactgaacaggtc 229
Query: 121 acctctagtgccctgaaaattgtacttggtttgtttgtttgtttgtttgtttgtttgttt 180
||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 228 acctctagtgccctgaaaattatacttg--------gtttgtttgtttgtttgtttgttt 177
Query: 181 gtttgttttaagatttatttattttacgtgtatgagtatactgtagctgtcttcagatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gtttgttttaagatttatttattttacgtgtatgagtatactgtagctgtcttcagatac 117
Query: 241 acta 244
||||
Sbjct: 116 acta 113
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
