BAC Information

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BAC

Clone NameMSMg01-129L12
Chromosome1 (Build37)
Map Location 96,445,328 - 96,445,647
singlet/doubletsinglet
Overlap genenone
Upstream geneFarp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025
Downstream geneLOC100040685, LOC383603, Tmem157, LOC100041686
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129L12.T7 (MSMg01no129_l12.b1)MSMg01-129L12.TJ (MSMg01no129_l12.g1)
ACCAG337656AG337657
length712728
length of high quality
(start - end)
320 (49 - 368)295 (72 - 366)
definitionCHROMAT_FILE: MSMg01no129_l12.b1 PHD_FILE: MSMg01no129_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:14 2005CHROMAT_FILE: MSMg01no129_l12.g1 PHD_FILE: MSMg01no129_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:14 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AACTACCTATTTCCAGAGGATCCGCGGAATTCCTAGTCATTTTCAGTGCT
TGACCCCATGACCTTCAATGCTAGTTGCCTTTTGAATTTCTGGAACTGGA
TCCGATATAAAACAGGAGAAAATATAGGGGGTGGGTAGCAGAGTGAGAGG
AGAAGGCAGTTGGTGCAGAAGACATTGTAGGAGACAGTTGAGCTAGGAGG
AGCTGAGCTGAGTGGATAGGCTACAACAGTTGTTATGGTTTGGAGCTGCA
AGTATTGGGGAAACTGTGTGGAACAACATTATGAACTAACAAGTACCCCG
GATCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGTCTAGTCGGCCA
TCACTGGAAAGAGAGGCCCATTGGACACACAAACTGTATATGCCCCACCA
CAGGGGAACGCCAGGGCCAAAAAAAATGGTAATGAGTGGGTAGGGAAGTG
GGGGAGAGCCCTTCTCTTTCTCCCCTCCTCTTCGCTTCCTAATCTTTCCT
CCTCTATTTCCCTCCTTTTCCTTCCAATGTCTTCACTACTCCCTCCTCCT
TTCTCCTTTATCTTTTCTTTCCCCCTTTTCTCTTACCCCTTTTGTTTTCC
CTCTTCTTCGCTCTTTTCTCTCCTTCTTCATCTCTCTTATTCTCCTTCTC
TTTTTTTTCTCTCTTCCCTTTTTTCTCCCTCCCCCCATTCTCTCCTCTTC
TTCTTCTTTTTG
TTGATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCCAGAAAATACCCTAAACCCATGTGGATCTAGGTTTTTAA
TTTTTGTTTTTGAGATTTTAATCACTGCTTCTAGTTCATTAGGGGTTACC
AGACAGGTTTATATTGGTTATCTTGTCTTGATTTAACTTTTGTAGCTGTA
TATGTTGAGAAAATTATCTATTTATTTGGGGTTTTCCAATTTGGATGAGA
ACAGGTTTTTAAAGTATGTCTTTATGACTATCTAGACTTCCTCAGTTTCT
GCTGTCAGGTCTCCCTTTTTGTTTCTAATTTTGTTAATTTGGATCTTCTC
ATTTCATCTTTTATTTGATTTCCGCAAGGGCTTTTCAATATTATTTATTT
TCTAAGGAATTAAACCCCTGCTTCATTGATTCTCTATATTTTGTTTATTT
GTTTGCTTCTGTTTTATTTATTTTAGCTTTGAGTTTTATTATTTCTATCT
ATTTTGGCTGTGATTCCTCTTGCTGTTGTGGTACTTTTGAGTGAGCTCTC
ATATTTCTAAAATGAGATCTCTTTCAATTTTTTATGTAACCACTTAGCGC
TATGAACATGCCTCTTAGAACCACTTTCACAGCGTTGTTTAAGTTTGTGT
ATGTTTTGTTTTTCCTCATTTAAAACCCTTAACTTCCTTTTTTACTCAAA
TCTTTACTCCATTTTCTTTCATTCCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_l12.b1 MSMg01no129_l12.b1 CHROMAT_FILE:
MSMg01no129_l12.b1 PHD_FILE: MSMg01no129_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:14 2005
         (320 letters)



>mm_chr1_96445128_96445847
          Length = 720

 Score =  542 bits (280), Expect = e-158
 Identities = 310/320 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgaccccatgaccttcaatgctagttgccttttgaatttctggaactggatccgatat 60
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||
Sbjct: 201 cttgaccccatgaccttcaatgctagttgccttttgaatttctggaacaggataggatat 260

                                                                       
Query: 61  aaaacaggagaaaatatagggggtgggtagcagagtgagaggagaaggcagttggtgcag 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacaagagaaaatatagggggtgggtagcagagtgagaggagaaggcagttggtgcag 320

                                                                       
Query: 121 aagacattgtaggagacagttgagctaggaggagctgagctgagtggataggctacaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagacattgtaggagacagttgagctaggaggagctgagctgagtggataggctacaaca 380

                                                                       
Query: 181 gttgttatggtttggagctgcaagtattggggaaactgtgtggaacaacattatgaacta 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttattatggtttggagctgcaagtattggggaaactgtgtggaacaacattatgaacta 440

                                                                       
Query: 241 acaagtaccccggatctcttgactctagctgcatatgtatcaaaagatggtctagtcggc 300
           || ||||||||||| |||||||| ||||||||||||| |||||||||||| |||||||||
Sbjct: 441 accagtaccccggagctcttgacgctagctgcatatgaatcaaaagatggcctagtcggc 500

                               
Query: 301 catcactggaaagagaggcc 320
           ||||||||||||||||||||
Sbjct: 501 catcactggaaagagaggcc 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)