Query= MSMg01no130_p05.b1 MSMg01no130_p05.b1 CHROMAT_FILE:
MSMg01no130_p05.b1 PHD_FILE: MSMg01no130_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:00 2005
(109 letters)
>mm_chr1_23469035_23469543
Length = 509
Score = 195 bits (101), Expect = 5e-55
Identities = 107/109 (98%)
Strand = Plus / Minus
Query: 1 acatctttgtctacacactatattttcccccacttaggctattgtaacactttaatgaat 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 309 acatctttgtctacacactatattttcccccacttaggctattggaacactttaatggat 250
Query: 61 ttcctgcctataccttaccctatttatatctcactaatctcccaggact 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttcctgcctataccttaccctatttatatctcactaatctcccaggact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space: 50601
Effective search space used: 50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
| Query= MSMg01no130_p05.g1 MSMg01no130_p05.g1 CHROMAT_FILE:
MSMg01no130_p05.g1 PHD_FILE: MSMg01no130_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:00 2005
(626 letters)
>mm_chr1_23324152_23325179
Length = 1028
Score = 1168 bits (604), Expect = 0.0
Identities = 622/628 (99%), Gaps = 2/628 (0%)
Strand = Plus / Plus
Query: 1 ctagaacagtaagag-ataatcatgagtcctaggaacaaagatatcctgttaaatgcaat 59
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 ctagaacagtaagagtataatcatgagtcctaagaacaaagatatcctgttaaatgcaat 260
Query: 60 gtgtggagtgctggagtaaatctgttccttccatcacaccaagaacaaacaagctgagca 119
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtggagtgctggagtagatctgttccttccatcacaccaagaacaaacaagctgagca 320
Query: 120 gaggtacttacagcacgtatcaccaacaaaccattactctttaacttagcgagttctaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggtacttacagcacgtatcaccaacaaaccattactctttaacttagcgagttctaaa 380
Query: 180 attacataaaagggcataaagaaattttatggtaatatgaacagacttggacaaatagct 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attacatagaagggcataaagaaattttatggtaatatgaacagacttggacaaatagct 440
Query: 240 tgagcaaacaactaaaaaatataaaaaa-tgttccttagtcagatgaaaagattagcaat 298
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tgagcaaacaactaaaaaatataaaaaaatgttccttagtcagatgaaaagattagcaat 500
Query: 299 tatatccacaccaaaataaataatgaaaaccacaacgaaagtctactttccacccatcaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatatccacaccaaaataaataatgaaaaccacaacgaaagtctactttccacccatcaa 560
Query: 359 actagaaagaaaaacatccaaaagctttacaacccattctgtaagtgaggcagagaaaca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actagaaagaaaaacatccaaaagctttacaacccattctgtaagtgaggcagagaaaca 620
Query: 419 gctacatggccacaagacatgggaaaggtatctacaaagaagaaagtgttagtctttaac 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctacatggccacaagacatgggaaaggtatctacaaagaagaaagtgttagtctttaac 680
Query: 479 ccattacatctaactgtgcgctacttacttgagaagatagcaacatcaacaaacgtcatt 538
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 ccattacatctaactgtgcgctacttacttgagaagatagcaacatcatcaaacgtcatt 740
Query: 539 aatccctgagagggagccaaccatagaccaaagaaacaattttgcccaagtctattgtga 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatccctgagagggagccaaccatagaccaaagaaacaattttgcccaagtctattgtga 800
Query: 599 accaattgcctcatgagcctttctcctt 626
||||||||||||||||||||||||||||
Sbjct: 801 accaattgcctcatgagcctttctcctt 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1028
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1018
Effective search space: 627088
Effective search space used: 627088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
