BAC Information

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BAC

Clone NameMSMg01-131B21
Chromosome1 (Build37)
Map Location 73,325,455 - 73,325,754
singlet/doubletsinglet
Overlap genenone
Upstream genePecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
Downstream genePinc, LOC672208, LOC100043291, Tns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131B21.T7 (MSMg01no131_b21.b1)MSMg01-131B21.TJ (MSMg01no131_b21.g1)
ACCAG338701AG338702
length720717
length of high quality
(start - end)
351 (79 - 429)301 (382 - 682)
definitionCHROMAT_FILE: MSMg01no131_b21.b1 PHD_FILE: MSMg01no131_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:14 2005CHROMAT_FILE: MSMg01no131_b21.g1 PHD_FILE: MSMg01no131_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCATCTATAATTGCGGCGCTAATACGACTACTATTCAAAAAGGAGGC
GCGGAATTCTTGTCTTCCGATAAATGCTCTAGGGTTGCCACGACAAAGCC
TCGCAGATCACGTGGCCCACTCTACCGCTTTCTCATGGTTCTGGAGTCTC
CCAGTCTGAAGTCAAGGTGTCAGCAGGGCCATGGTGCTCCCTCCGAAGGC
AAAAGGTCAGGAGCTCCTCCTCCTCATTTCTCCAGGCTCCTTATGGTTGC
TGGCATCCTTGGTGTTCCCTGGCTCAGAGCTACATCATTTCGGTCTTCCA
TGACCTTTCCCCTTGACCTTTCCTCTTGTGTATCTGTTTATTTTGCTTAA
ACTCCCCTTTCATTTCTCCTCCCCCATCTCTCCATTCTTTACTATGTATG
TGTGTGTGTGTGTGTGTGTGTGTGTGAAAGAGAGTGTGTGTGTAAAACAC
TTTCATGTACCCCAGGCTGCCTCTAAACTTACTATATAGACAAGGATGGC
CTTAAACTTCTGATCTTCCTTTCTTGACCTGCCAAGCACTGGAATTACAG
GCCATTCTCTCAGTAACTCCCGATTTCCGTGTTGCTGGGGATTGAAAACA
AGGCTTCTGGCATGGGGCTCTACTTGCTGAGAGATATTCTCAGCCCCTTC
AGGTTACTTTTGTTTTTTAAAGATAACGATATCAGTTATGTTGACTTTAG
GACCCAACCTAATCCATTAA
NNCCCTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATAATGAACAAACAAGTG
TGTGAAATCTGTAGTGTGGGAAATGCCCGAAAACTACCTGAACTGCCAAC
TGATCTTGGAAAACATCCTGAGACCTCAGATGGCTCTTTGTCACCTGTTC
CCTGGTCTGTCAGGAATTGTTCCGGATGCTTTGATTTACTCCTCACAAAT
ATCCTGCATGATGGGTGGCATTGTTTTTATAAATAAACGAGAGGGTAGAA
GGCATGCAGGAGTTGTCAGAGGTGTAATGAGGTGGAGTTGGCATTCCAGT
TCGCGGTTTTTACACTTGTCAGGCCACCCTTCTGCTTGAAAGCTACTCAG
AGGTACAAGCAGACGCGGTAAAAGAAAATTTAAAATGACATTGAGTAACT
CTCAGAATATAAGGGACTGTCAACCATAGCTAACTGATACTCTCTTCAGT
CTTTGTTTGATCTCTATGCAATTAGACATTTGAGAAATACTATTTTGGAC
TCTGTTTCTCCGGGCTTCCCTGTATTTTTTGGAGGGGACAGGATATGTTT
AAAAGCTGGATTCCAGACAAACTGTCTTTCCATTCCTCCCCTGCTATTAG
CTATCTATTCATCCTGACTCAGTTAATGGATAATTTTTGGCCACTGATTA
CCATACGGTTTCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_b21.g1 MSMg01no131_b21.g1 CHROMAT_FILE:
MSMg01no131_b21.g1 PHD_FILE: MSMg01no131_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:14 2005
         (301 letters)



>mm_chr1_73325255_73325955
          Length = 701

 Score =  557 bits (288), Expect = e-163
 Identities = 297/300 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcttgaaagctactcagaggtacaagcagacgcggtaaaagaaaatttaaaatgacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 500 ctgcttgaaagctactcagaggtacaagcagacgcggtaaaagaaaattaaaaatggcat 441

                                                                       
Query: 61  tgagtaactctcagaatataagggactgtcaaccatagctaactgatactctcttcagtc 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 440 tgagtaactctcagaatataagggactgtcaaccatagctaactgacactctcttcagtc 381

                                                                       
Query: 121 tttgtttgatctctatgcaattagacatttgagaaatactattttggactctgtttctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttgtttgatctctatgcaattagacatttgagaaatactattttggactctgtttctcc 321

                                                                       
Query: 181 gggcttccctgtattttttggaggggacaggatatgtttaaaagctggattccagacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gggcttccctgtattttttggaggggacaggatatgtttaaaagctggattccagacaaa 261

                                                                       
Query: 241 ctgtctttccattcctcccctgctattagctatctattcatcctgactcagttaatggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctgtctttccattcctcccctgctattagctatctattcatcctgactcagttaatggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)