BAC Information

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BAC

Clone NameMSMg01-131D22
Chromosome1 (Build37)
Map Location 94,380,268 - 94,380,812
singlet/doubletsinglet
Overlap genenone
Upstream geneTraf3ip1, Asb1, Twist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416
Downstream geneOlfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131D22.T7 (MSMg01no131_d22.b1)MSMg01-131D22.TJ (MSMg01no131_d22.g1)
ACCAG338797AG338798
length720736
length of high quality
(start - end)
292 (78 - 369)549 (73 - 621)
definitionCHROMAT_FILE: MSMg01no131_d22.b1 PHD_FILE: MSMg01no131_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:24 2005CHROMAT_FILE: MSMg01no131_d22.g1 PHD_FILE: MSMg01no131_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAATCTATAATTGCGGCGCTAAACGACTCCTATATCAGATAAGGCGCG
GAATCAAGGCCCATTCAAAACATAGGAAAAGCAATATACAACAAACCAGT
AGCCAACATCAAACTGAATGGAGAGAAACTTGAAGCAATCCCACTAAAAT
CAGGGACTAGACAGGCCTGCCCACTCTCTCCCTATCTATTCAACATAGTA
CTTGAAGTTCTAGCCAGAGCAATTAGACAACAAAAGGAGGTCAAAGGGAT
ACAAATTGGAAAGGAAGAAGTCAAAATATCACTACTTGCAGATGATTTGA
TCGTATGTTTAAGTGACCCTAATTATTCCACCAGAGAACTCCTAAAGCTG
ATAAACAACTTTAGCAAAGTGCCTGAATAAACTCAAACAAATCAGTAGCC
TTCCTCTACTCAAAGGATAAACAGGCTGAGAAAGAAATTAGGGAAATGAA
CCCCTTCACAATTGTCACAAATAATATTACATACCTTGGTGTATCTAACC
AAGCAAGTGAAAGATCTGTATGACAAGAGCGTCAAATCTCTGAAGAAATA
AATCGAAGAACATCTCATAAGATGGAAAGATCTCCCATGCTCATGGATTG
GCAGGAATAATATAGGAAAAATCGCCATCTTTGCCAAAGCAATCTACAGA
TTCAATGCTATATCCATCAAAATTCCCAGTCAATTCTTCATAGAGTTTGA
AAGAGCAATTTGCCAATTCT
AATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAGCTTGTTGAACCAGCCTTACAGACAG
CCATGAAGCTACCCAATAAGCACTCACAGAGTGTACACACACACACACAC
ACACACACACACACACACACACACACCAGGCAGAGCTCCTAGACACAGGT
AGCCACAAGACCTTCTCTTATACTTCTATTACTGCTATGACCTGGGTAGG
CTAAGTAACTGAGTTCACCTGTCTCTTCTTTTCCTCTCTCCTTGCTGACA
GTACCTAAGGCTATTGCCACTGGGTATCATAGGCCATAGCTTAAAACAGC
AGACATTTGCTCTTTGAAAATTTGGGGGATCAGAGGTTCAAAATCAAAAT
GTGGCCGGATTGCTCTCCTGCCTGACCTCTGGGGAGAACCCTCTCTGCCT
CTTCTTAGGTCGGGTCCTCAGGCCCGTGGCTGCATGGTTTCAACATCTGC
CTCAGTGTCCATGTGGCCATTCTGTCTTAGATGTCTATTCTTTGCTGTCT
TTCATAAAGTCATTGTCATTGAAGTGAAGGTCCATTATCAAGGAAGTCAG
AAATTTGTGAAATCTGAGTCTTCCTTGCTATCATCATGTGTATGCTATGA
CATTCAACAGGAAGGAAAGGACTCCTTCTGTACTCAGGGTCTGAGATCCC
CTCACTGGGGGGGTCTAATGACACTACCTTCCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_d22.g1 MSMg01no131_d22.g1 CHROMAT_FILE:
MSMg01no131_d22.g1 PHD_FILE: MSMg01no131_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:24 2005
         (549 letters)



>mm_chr1_94379964_94380912
          Length = 949

 Score =  996 bits (515), Expect = 0.0
 Identities = 539/549 (98%), Gaps = 4/549 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcttgttgaaccagccttacagacagccatgaagctacccaataagcactcacagagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 849 aagcttgttgaaccagccttacagacagccatgaagctacccaataaacactcacagagt 790

                                                                       
Query: 61  gtacacacacacacacacacacacacacacacacacacacacaccaggcagagctcctag 120
           ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gt----acacacacacacacacacacacacacacacacacacaccaggcagagctcctag 734

                                                                       
Query: 121 acacaggtagccacaagaccttctcttatacttctattactgctatgacctgggtaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 acacaggtagccacaagaccttctcttatacttctattactgctatgacctgggtaggct 674

                                                                       
Query: 181 aagtaactgagttcacctgtctcttcttttcctctctccttgctgacagtacctaaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 aagtaactgagttcacctgtctcttcttttcctctctccttgctgacagtacctaaggct 614

                                                                       
Query: 241 attgccactgggtatcataggccatagcttaaaacagcagacatttgctctttgaaaatt 300
           |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 attgccactggggaccagaggccatagcttaaaacagcagacatttgctctttgaaaatt 554

                                                                       
Query: 301 tgggggatcagaggttcaaaatcaaaatgtggccggattgctctcctgcctgacctctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgggggatcagaggttcaaaatcaaaatgtggccggattgctctcctgcctgacctctgg 494

                                                                       
Query: 361 ggagaaccctctctgcctcttcttaggtcgggtcctcaggcccgtggctgcatggtttca 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 493 ggagaaccctctctgcctcttcttaggtcaggtcctcaggcccgtggctgcatggtttca 434

                                                                       
Query: 421 acatctgcctcagtgtccatgtggccattctgtcttagatgtctattctttgctgtcttt 480
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 acatctgcctgagtgtccatgtggccattctgtcttagatgtctattctttgctgtcttt 374

                                                                       
Query: 481 cataaagtcattgtcattgaagtgaaggtccattatcaaggaagtcagaaatttgtgaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cataaagtcattgtcattgaagtgaaggtccattatcaaggaagtcagaaatttgtgaaa 314

                    
Query: 541 tctgagtct 549
           |||||||||
Sbjct: 313 tctgagtct 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)