Query= MSMg01no132_c11.b1 MSMg01no132_c11.b1 CHROMAT_FILE:
MSMg01no132_c11.b1 PHD_FILE: MSMg01no132_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:35 2005
(678 letters)
>mm_chr1_193262063_193263138
Length = 1076
Score = 1156 bits (598), Expect = 0.0
Identities = 650/676 (96%), Gaps = 19/676 (2%)
Strand = Plus / Plus
Query: 5 gaattcc-caagactacccggttactggcacctcccagggacccagcagggaagaattca 63
||||||| |||||||||| |||||||||||||||||||| |||||||
Sbjct: 218 gaattccacaagactacctggttactggcacctcccagg--------------gaattca 263
Query: 64 gtaatccttaaccaggatgcaagatgcgctcagtgacagaatgctttcctggcac-tcaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 264 gtaatccttaaccaggatgcaagatgcgctcagtgacagaatgctttcctggcacgt-ga 322
Query: 123 gaggcctgggctggatgaggagctaaaaggcaaagcagacaggagtctgctctctaattg 182
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 323 gaggcctgggctggatgaggagctaaaaggcaaagcagagaggagtccgctctctaattg 382
Query: 183 gagaactatctatgaggaagcagaaaggattcatcctgcgggccagtcagaggagccagg 242
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 383 gagaactatctatgaggaagcagaaaggattcatcctgcaggccagtcagaggagccagg 442
Query: 243 gtcatccacagtcatttgagccttcctcctctctgattatgtatcctgctgtgtgttctg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtcatccacagtcatttgagccttcctcctctctgattatgtatcctgctgtgtgttctg 502
Query: 303 aatggaaactgtctagctactccgtgtggtgtatgcactggttgctaattccggaagact 362
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 503 aatggaaactgtctagctactccgtg-ggtgtatgcactggttgctaattccggaagact 561
Query: 363 tgttaatcctgggcagaatcatgaccaaggctggtgagtcacacgccccatgtggaacac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgttaatcctgggcagaatcatgaccaaggctggtgagtcacacgccccatgtggaacac 621
Query: 423 actggctgtcaggatgaaccagaagctgctctctttgctccaaagggccctttttccctt 482
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 622 actgactgtcaggatgaaccagaagctgctctctttgctccaaagggccc-ttttccctt 680
Query: 483 ctgaggtcttctggggagaaggatcaagaaagatcacagcaggcctctggatcccttcac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgaggtcttctggggagaaggatcaagaaagatcacagcaggcctctggatcccttcac 740
Query: 543 tctgtaaacccacagatgccacaggttcttctggtggcctcctggagaggtcagtccctc 602
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctgtaaacccatagatgccacaggttcttctggtggcctcctggagaggtcagtccctc 800
Query: 603 cccacagaatgtcactgggttcctggaagaggtgggcagtacccacttgacctctctggg 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cccacagaatgtcactgggttcctggaagaggtgggcagtacccacttgacctctctggg 860
Query: 663 cagccaggaaactagt 678
||||||||||||||||
Sbjct: 861 cagccaggaaactagt 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1076
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1066
Effective search space: 712088
Effective search space used: 712088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_c11.g1 MSMg01no132_c11.g1 CHROMAT_FILE:
MSMg01no132_c11.g1 PHD_FILE: MSMg01no132_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:35 2005
(653 letters)
>mm_chr1_193431318_193432372
Length = 1055
Score = 1127 bits (583), Expect = 0.0
Identities = 593/597 (99%), Gaps = 2/597 (0%)
Strand = Plus / Minus
Query: 58 gtgtgtatgttatggcttctagttcagcatttttatcagattcctaagaggtttaacttt 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 gtgtgtatgttatggcttctagttcagcatttttatcagattcctaagaggtttaacttt 996
Query: 118 tagaaaaagctcctggtagctgggaacaaagactcacgactgtaatcccagccagtgctt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 tagaaaaagctcctggtagctgggaacaaagactcacgactgtaatcccagccagtgctt 936
Query: 178 gtgaattcaagacaagagtactgccctgagttcaaggcacacctgcactacacagtcaca 237
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 gtgagttcaagacaagagtactgccctgagttcaaggcacacctgcactacacagtcaca 876
Query: 238 ctctgtctcaaaagaaaacaacaaaagttactggtactgccttaattttaaatatttttt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 ctctgtctcaaaagaaaacaacaaaagttactggtactgccttaattttaaatatttttt 816
Query: 298 gtagtactgtgatgaaagctagggtgttctacatgttgggcaaacactgtacattgcact 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 gtagtactgtgatgaaagctagggtgttctacatgttgggcaaacactgtacattgcact 756
Query: 358 atatccccagtcctgcagaattacgttaacctgtttgctttt--aataaagtccaacatt 415
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 755 atatccccagtcctgcagaattacgttaacctgtttgcttttcaaataaagtccaacatt 696
Query: 416 agtgctggcattcttaggtatctgccaacagactagttcctagtcatttacagcaggaaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 agtgctggcattcttaggtatctgccaacagactagttcctagtcatttacagcaggaaa 636
Query: 476 aagcagttccttaccagaagttcctgttgcttgtctgtggctgatcgtccaatcaccttg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aagcagttccttaccagaagttcctgttgcttgtctgtggctgatcgtccaatcaccttg 576
Query: 536 tagagctccacgaggtccccaagcattccatcgcccagtaccgggagctgcatggcaatg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tagagctccacgaggtccccaagcattccatcgcccagtaccgggagctgcatggcaatg 516
Query: 596 gctgccaggcagtggcacatgaggattcgggcagcatcctgagagctgtgcagctga 652
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 515 gctgccaggcagtggcacatgaggatccgggcagcatcctgagagctgtgcagctga 459
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1055
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1045
Effective search space: 671935
Effective search space used: 671935
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
