Query= MSMg01no132_f03.b1 MSMg01no132_f03.b1 CHROMAT_FILE:
MSMg01no132_f03.b1 PHD_FILE: MSMg01no132_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:48 2005
(506 letters)
>mm_chr1_41634714_41635622
Length = 909
Score = 913 bits (472), Expect = 0.0
Identities = 498/508 (98%), Gaps = 3/508 (0%)
Strand = Plus / Minus
Query: 1 cacccctgactcatatttccacagcctctgtgtcaatacgcagatatcaagtgttatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 cacccctgactcatatttccacagcctctgtgtcaatacgcagatatcaagtgttatttt 649
Query: 61 ttggatataggtggagtctctagagttcatgggacagttatctagaattttctttcctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ttggatataggtggagtctctagagttcatgggacagttatctagaattttctttcctca 589
Query: 121 tttttccttacccct---ttaaaaaaaatgttccatcattttcatgggatttttatttaa 177
||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 588 tttttccttacccctttcttaaaaaaaaagttccatcattttcatgggatttttctttaa 529
Query: 178 tctgtaactataatggttttctatgtaaacaccaagtcagaaaacagcaatagtctctta 237
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 528 tctgtaactataatggttttctatgtaaacaccaagtcagaaaacagcaatattctctta 469
Query: 238 tttttcaggctttcatacatgtgtttattcatggagcctgaagcaattatcaccctggtt 297
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 468 tttttcaggctttcatacatgtgtttattcatggtgactgaagcaattatcaccctggtt 409
Query: 298 agtgccttctccttcaaagaacagggacgcaagtttataagccccttacctgagggatga 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 agtgccttctccttcaaagaacagggacgcaagtttataagccccttacctgagggatga 349
Query: 358 gagacaaaatctgactgagtcactgtttttcatctagtaattttaaaacaccacatataa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gagacaaaatctgactgagtcactgtttttcatctagtaattttaaaacaccacatataa 289
Query: 418 ttaattacaggattagatttttcagttacctggacttttctttccttgctttccttttta 477
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 288 ttaattacaggattagatttttcagttacctggacttttctttccttgttttccttttta 229
Query: 478 aaaatagttctaccatttgatggggctt 505
|||||||||||||||||| |||||||||
Sbjct: 228 aaaatagttctaccattttatggggctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 909
Length adjustment: 10
Effective length of query: 496
Effective length of database: 899
Effective search space: 445904
Effective search space used: 445904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_f03.g1 MSMg01no132_f03.g1 CHROMAT_FILE:
MSMg01no132_f03.g1 PHD_FILE: MSMg01no132_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:48 2005
(566 letters)
>mm_chr1_41589397_41590362
Length = 966
Score = 1009 bits (522), Expect = 0.0
Identities = 555/566 (98%)
Strand = Plus / Plus
Query: 1 gaatggataaaggccacagttgatttactggtgtccctacatgttgaaataccgagtagt 60
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 gaatggataaaggccacggttgatttactggtgtccctacatgttgaaatactgagtagt 260
Query: 61 agtttcttaaaccacacaatcagagatatatttgtctattgtttcaccatatagagatat 120
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 agtttcttaaacaacacaatcagagatatatttgtctattgtttcactatatagagatat 320
Query: 121 atttgtctattgtttcactgattagtatactgctggacacagcagaatataaatgcttga 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 atttgtctattgtttcactgattagtacactgctggacacagcagaatataaatgcttga 380
Query: 181 gaattggtttggtgaaaactagttaattaaccacctgtataggtggagtgggaagtgttg 240
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 381 gaattggtttggtgaaaactagttaatgaaccacatgtataggtggagtgggaagtgttg 440
Query: 241 tttcagccactgctctgtcactgtgtctccttaccctttcctgaggctatgaagctaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcagccactgctctgtcactgtgtctccttaccctttcctgaggctatgaagctaaat 500
Query: 301 atgttgacacattggattacagcagtgttttatccacctcatataagctgatccaagata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgttgacacattggattacagcagtgttttatccacctcatataagctgatccaagata 560
Query: 361 ggggccagctctgtaatcagtgaatgaaatacaaggacatacctcttacattatccactg 420
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggtccaactctgtaatcagtgaatgaaatacaaggacatacctcttacattatccactg 620
Query: 421 tcttcctgactagaaaacaatctgaagtacatatcatccgagaaaacaattccttcatcc 480
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 tcttcctcactagaaaacaatctgaagtacatatcatcctagaaaacaattccttcatcc 680
Query: 481 aggacatctttcattttgtccataaaactcagattccctcttttgctcttccctcagcac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggacatctttcattttgtccataaaactcagattccctcttttgctcttccctcagcac 740
Query: 541 agagacaacagctgtatttcaatttg 566
||||||||||||||||||||||||||
Sbjct: 741 agagacaacagctgtatttcaatttg 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
