BAC Information

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BAC

Clone NameMSMg01-132F10
Chromosome1 (Build37)
Map Location 137,730,697 - 137,868,458
singlet/doubletdoublet
Overlap geneTnnt2, LOC100042477, Pkp1, 9830123M21Rik
Upstream genePpp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1
Downstream geneTmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132F10.T7 (MSMg01no132_f10.b1)MSMg01-132F10.TJ (MSMg01no132_f10.g1)
ACCAG339610AG339611
length693692
length of high quality
(start - end)
232 (129 - 360)250 (71 - 320)
definitionCHROMAT_FILE: MSMg01no132_f10.b1 PHD_FILE: MSMg01no132_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:49 2005CHROMAT_FILE: MSMg01no132_f10.g1 PHD_FILE: MSMg01no132_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,730,697 - 137,730,928)(137,868,209 - 137,868,458)
sequence
ACCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAAAGTTTCCGCAAGAGACCTCAAAGGTCTTTGGGGTGTTCAT
GATGTAAATTTTGGGAGGTTCCTCCGCAAGTGAAGCTCTGTAGCAAGTGA
AGCTGTCCTACGGACTTTTAGGAGAGGCTCATGGAGTTCCCCGAGAGGGC
AGAGGGGCTGCTCATCAGGTGCAGGCTTGAAGTGGTGTGAGCTCTGCTTG
CATCCCCTCTTTGGGGTGCCCACTGTGGGCAGACAGTTGGTGGTGGGAGA
GTTGGGGCAGCTGCATTCCACAGTTGCTTCTGCCTCCTGCTTTGCTCTGG
AGACAGCTGATGTTTATTCCCCCCCCCCCCCCCGCAGGAGGTGACATTTG
AGTGCCCCCTGGAGGCACTCTGGACAAAAAAAAAAGCTCTGCTGCTGCGG
TGGCCTGGGTACATCCTGCCTGTCATCGTGTGGGTATCCAGTGTGCACCA
GCCCGTGTACTTCTTCAGATCATCACACTTCTGATTTTCTGCCTATCTGC
CTAGGCCTGGTTATTTTTAACGACCAGACCTTCTAAGTTGCTTCTGGAGT
CATCTTGCTATGCTCCAGTGTGGCTGCCAAGAAGTGTCTGCCTGGATAAA
GTCCCCACACCTAACATGCTCAGAACCCATTGGTTTTCTAGGA
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCCTGCCTTTCCTACGATAAGGTCTCAGAG
TGCAGACAGGAGGGCTTCCTTCCCTTTGTCATCTGCTTCTGGATACTCTG
TCACTCAGAGAGAATGAGGAAGGTTCCTTAGATCTATTCTTGGTTGAGTA
CAACCCAGCCTCATCATGGCCTGCCAAACCCAGCTGTGTGTACTCCATTA
AACCTCTTAGGGTTACTCAGGAGCCTCAGACCCAGGACTTGGGATAGAGC
TTATGCCAGTGGCGCGTGATTAATGTGGACGAGAAGCCCCGGGGTGGGCC
AGGAAACACCCCAATCCTCGCAAGCATTGGCATCTGGGGGCAATATGGTC
CCCAGAAACTGAATTGGCCAGAGGCAAGGCAGACAGTAGGACAAATGGGT
CTTCCAAAACCCACAGCAGCTTGATAAGTTAACAGCTCTGACACAGAAGC
TTGTGTGCCAAAACCCCATGACCCACGTGGCAGGATGGGGTGGCTTGTAT
ATACAGGCCTGGGGGATGAAGTGATGGATGCATCTACTAAATGTGCCGAA
ACATCCTTGGCTTTTTGTTTTTTGTTTGCTTGATTTGTTTGGCTCCTCTA
ATGGCCCCTTTCTCCCCGGCGTATGGTGAGGGCTAGGTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_f10.b1 MSMg01no132_f10.b1 CHROMAT_FILE:
MSMg01no132_f10.b1 PHD_FILE: MSMg01no132_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:49 2005
         (232 letters)



>mm_chr1_137730497_137731128
          Length = 632

 Score =  441 bits (228), Expect = e-128
 Identities = 231/232 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgaagctctgtagcaagtgaagctgtcctacggacttttaggagaggctcatggagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgaagctctgtagcaagtgaagctgtcctacggacttttaggagaggctcatggagtt 260

                                                                       
Query: 61  ccccgagagggcagaggggctgctcatcaggtgcaggcttgaagtggtgtgagctctgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccgagagggcagaggggctgctcatcaggtgcaggcttgaagtggtgtgagctctgct 320

                                                                       
Query: 121 tgcatcccctctttggggtgcccactgtgggcagacagttggtggtgggagagttggggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcatcccctctttggggtgcccactgtgggcagacagttggtggtgggagagttggggc 380

                                                               
Query: 181 agctgcattccacagttgcttctgcctcctgctttgctctggagacagctga 232
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctgcattccacagctgcttctgcctcctgctttgctctggagacagctga 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no132_f10.g1 MSMg01no132_f10.g1 CHROMAT_FILE:
MSMg01no132_f10.g1 PHD_FILE: MSMg01no132_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:50 2005
         (250 letters)



>mm_chr1_137868009_137868658
          Length = 650

 Score =  476 bits (246), Expect = e-139
 Identities = 249/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctgcctttcctacgataaggtctcagagtgcagacaggagggcttccttccctttgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ccctgcctttcctacgataaggtctcagagtgcagacaggagggcttccttccctttgtc 391

                                                                       
Query: 61  atctgcttctggatactctgtcactcagagagaatgaggaaggttccttagatctattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atctgcttctggatactctgtcactcagagagaatgaggaaggttccttagatctattct 331

                                                                       
Query: 121 tggttgagtacaacccagcctcatcatggcctgccaaacccagctgtgtgtactccatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tggttgagtacaacccagcctcatcatggcctgccaaacccagctgtgtgtactccatta 271

                                                                       
Query: 181 aacctcttagggttactcaggagcctcagacccaggacttgggatagagcttatgccagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aacctcttagggttactcaggagcctcagacccaggacttgggatagagcttatgccagt 211

                     
Query: 241 ggcgcgtgat 250
           || |||||||
Sbjct: 210 ggtgcgtgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)