XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTCCAT
ATTCTTGCAGGAATTTATTCACAGAAAGGCTACAATTTGGGGGGTTGAGT
AAGAAGCCAACTGATTGTCAGGTGTTAGATAATGTCTCCCAGCACCCAGA
ATGCAGGATTCCTTAATGCAGGATTCCTTTCCTTGGGATTATTTCTTTTC
TTTGGGACACTTTATCTCTTTTCCTGAAGAGAGATGCCTAGTTATCAAGG
CTTCTTGAGAAAGATGATGTGCTGGGCTGGAGAGATGGCCCAGTGGTTAA
GAGCACTGACTGCTCTTACTGAGGTCCTGAGTTCAATTCCCAGCAACCAC
ATGGTGGCTCACAACTATCTATAATGGGATCAGATGCACTCTTCTGCTGT
GTCTGAAGACAGCTACAGTGTACTTATATATAATAACTAAATCTTTAAAG
AGAGAGAGAGAAGGATGTTGTTTAGTATAATTATTAATTAATAAGTCCTG
GTTGCAGGTTCTGCTACCCACTCCAAAGGTCTATAAAACCTTTATATTTG
ATAAGACTTAATCAGCACAATAGCTGGGCCACTGCCTAAGCTCCATGCAG
TTAATCCTGAGTTATTACTGATTCTGTTGTTCTATCTTGGCTTCTCTGGA
TCTAGTTGGGCAACCCTCTAGGCCATGCTCTCCCAGCTCCTTCTCATGAT
GGTGATGC

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCCCCCCAACTCGACTCAGGTGTTAGGTATGT
GTATATATCTGCCTGCAGGTATGTGCACATGAGACCTGCTGCCATGCTTC
CTGCCATGAAAGCTAGCAAATCCCCTGGAGTTGGAGGTTCAGGAAGTTTT
AGCTGCCTGAGTACTGGGAACTGAACTTCGGTCCTCTGAAAAAACAGCAA
GCTCTTGAAACCGTTAAGCTATGTCTCTGCCCCTAAAAATTATTTTAGAA
TGTGAACAGTGGTCTACTTGGNATGGTTTGAATATTTTTTTCTCANNATT
TTATATTAGTTTGCCATACCCCCCTGCAGAGAAACCCGGCANCCACGGGG
TAAAAAAGGGCTAAAACCCCTTATGCCCTCCTTTGTTTGCTGATGCCNNN
TTTTCCCNNNGAAAGGTCTGAAACAAAAAANNNTTCCTTTCCCAGAAAAA
AAGGTTTTTAAAAAATTTTNNNTTAAAAATTCCAAAGGGACTATTCCACC
CNNNTTAGTTCCTCCTGATGGGGGNNNNNNNCCCNNNATNAGTCNNNTTG
GANNNAAGGNNNNNTTCNNNAAAGATATAATAATAATAAAAANNNACTAA
ATTANNNNNNNNNNNNCTTNNNNNNNNNTTAAATNNNNNNNNGGGGGGGG
GGGGGGGGGGGGGCTAAGGGGGCCNNNNNNNNNNNNNNNNNNNNNNNNNN
NGGGGGGGGGGGGG

Query= MSMg01no132_f19.b1 MSMg01no132_f19.b1 CHROMAT_FILE:
MSMg01no132_f19.b1 PHD_FILE: MSMg01no132_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:51 2005
         (672 letters)



>mm_chr1_179684224_179685296
          Length = 1073

 Score =  808 bits (418), Expect = 0.0
 Identities = 433/438 (98%), Gaps = 1/438 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattccatattcttgcagg-aatttattcacagaaaggctacaatttggggggttgag 63
           ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 438 ggaattccatattcttggaggaaatttattcacagaaaggctacaatctggggggttgag 379

                                                                       
Query: 64  taagaagccaactgattgtcaggtgttagataatgtctcccagcacccagaatgcaggat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 taagaagccaactgattgtcaggtgttagataatgtctcccagcacccagaatgcaggat 319

                                                                       
Query: 124 tccttaatgcaggattcctttccttgggattatttcttttctttgggacactttatctct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tccttaatgcaggattcctttccttgggattatttcttttctttgggacactttatctct 259

                                                                       
Query: 184 tttcctgaagagagatgcctagttatcaaggcttcttgagaaagatgatgtgctgggctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tttcctgaagagagatgcctagttatcaaggcttcttgagaaagatgatgtgctgggctg 199

                                                                       
Query: 244 gagagatggcccagtggttaagagcactgactgctcttactgaggtcctgagttcaattc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gagagatggcccagtggttaagagcactgactgctcttactgaggtcctgagttcaattc 139

                                                                       
Query: 304 ccagcaaccacatggtggctcacaactatctataatgggatcagatgcactcttctgctg 363
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 138 ccagcaaccacatggtggctcacaaccatctataatgggatcagatgcactcttctgctg 79

                                                                       
Query: 364 tgtctgaagacagctacagtgtacttatatataataactaaatctttaaagagagagaga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  tgtctgaagacagctacagtgtacttatatataataactaaatctttaaagagagagaga 19

                             
Query: 424 gaaggatgttgtttagta 441
            |||||||||||||||||
Sbjct: 18  caaggatgttgtttagta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1073
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1063
Effective search space:   703706
Effective search space used:   703706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)