XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTCATGTAAATGAATCATTTCTAGTCTATCAGCCATAGCCAAACCTGTAC
TCTCACCTTGAAAATCCCTACCCAACCCTAAAGGACAATATATCAATTAT
TATCCCCCAAAGAGAGCTGTAACACTGAGAAAAACATCTCCATGGACACC
TCCACTTCTTACTTCACTCCTCTACCTAACCTCCACCCCCACCCTCATAC
TCAAGAAAACCAAGTTTCTGTTATTTTCTTCACTATGTCCTGGCTCAAAA
CGGTGCTACAAGATTTTTGAAGTAGTTAATCCAAGCAATTAAAATTACCC
ACAGGAACCCCTTGCTGAGAACCACCACAGCCCAAAGTCATGGCCAGACA
GAAAGGGAAATTTTCTTTCAGAAAAGTATTTAAAACTTAGCAAACTTCCA
TGAGACGGAAACCTAAATAGTGATAGCCAATGTCAGTAGGGCTACCTTGA
TCAAGCCTGCCTATATTTACAAAACTATGGTTTCTCCTTCAAACTAAACT
TTATGTCAAAACCCTGAAGATGGATTATATTATCCCTCTTCTCAATGAGG
CCGTGTTGCCTAAATCTCCCTTTTCTGCATTTCAAAATTTACTGGGTTAT
TTTAACTGGTTTATCAAGGACAGACGAGGTCTGAGAAACTGGACTGTCTA
GGCACAGA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTTTTAATGGCCTTTTTGTTTATGCTTAG
TGTACATGTTTGGAGAATGAACATGTGTTCAATGGTACATATGTGAAGAA
CAATAGACTAATTTATGGAGTAGATTTTTTTCCTTCTGCAGATTCTGAGG
ATTGAACTTAGGTTACTAGGCTTATACTGCAAGCTCTTTTACTCACTTAA
CCATTTGACTGGCCCTTTTTCTTCCATTTTTGTTTCCATCTTCCTTACCT
ATTTCTTAGTCTCTATTCTGTTCTTATTTTCTTTACAGCTCTCACTAGGA
AAGCTCACTAAAGTTTTATTAATAAAGTTCAATATTGTTTAGATTTTTTC
AAGATATATTAGTTTTACTTACCATACTGTAAACATCCATTTAAGAGTGT
ATTAAAGGGAATGGGAGAAATTCTTCTTAGTCCTTTCATAGTCTCCCAAA
CACTTTATTTTATTGAAAAGCTTTTAGACTATTCTGTTGTTTACTATTCA
AGTAGGTTTTTCTTTTTGTGTGGGCGTTCTGTGTGGCATGAGATGAAGAA
AACAAGGTTTGAAAAGCCTCATGGGCTCTGTTCACCCCAACAAAGTTAAG
TGAGTTCTAGTTATAGATTCCTGGTCCGTGTATCTATGAAGTGAAC

Query= MSMg01no132_j18.b1 MSMg01no132_j18.b1 CHROMAT_FILE:
MSMg01no132_j18.b1 PHD_FILE: MSMg01no132_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:10 2005
         (320 letters)



>mm_chr1_103545430_103546149
          Length = 720

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttcttcatgtaaatgaatcatttctagtctatcagccatagccaaacctgtactctcacc 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttcttcatgtaaatgaatcatttctagtctatcagccatagccaaacctgtactctcacc 267

                                                                       
Query: 68  ttgaaaatccctacccaaccctaaaggacaatatatcaattattatcccccaaagagagc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttgaaaatccctacccaaccctaaaggacaatatatcaattattatcccccaaagagagc 327

                                                                       
Query: 128 tgtaacactgagaaaaacatctccatggacacctccacttcttacttcactcctctacct 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgtaacactgagaaaaacatctccatggacacctccacttcttacttcactcctctacct 387

                                                                       
Query: 188 aacctccacccccaccctcatactcaagaaaaccaagtttctgttattttcttcactatg 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aacctccacccccaccctcatactcaagaaaaccaagtttctgttattttcttcactatg 447

                                                                       
Query: 248 tcctggctcaaaacggtgctacaagatttttgaagtagttaatccaagcaattaaaatta 307
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcctggctcaaaaccgtgctacaagatttttgaagtagttaatccaagcaattaaaatta 507

                        
Query: 308 cccacaggaaccc 320
           |||||||||||||
Sbjct: 508 cccacaggaaccc 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no132_j18.g1 MSMg01no132_j18.g1 CHROMAT_FILE:
MSMg01no132_j18.g1 PHD_FILE: MSMg01no132_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:10 2005
         (601 letters)



>mm_chr1_103615758_103616758
          Length = 1001

 Score = 1077 bits (557), Expect = 0.0
 Identities = 590/601 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttttaatggcctttttgtttatgcttagtgtacatgtttggagaatgaacatgtgttc 60
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 801 tgttttaatggcctttttgtttatgcatagtgtacatgtttggagaatgaacatgtattc 742

                                                                       
Query: 61  aatggtacatatgtgaagaacaatagactaatttatggagtagatttttttccttctgca 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catggtacatatgtgaagaacaatagactaatttatggagtagatttttttccttctgca 682

                                                                       
Query: 121 gattctgaggattgaacttaggttactaggcttatactgcaagctcttttactcacttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gattctgaggattgaacttaggttactaggcttatactgcaagctcttttactcacttaa 622

                                                                       
Query: 181 ccatttgactggccctttttcttccatttttgtttccatcttccttacctatttcttagt 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 ccatttgactggccctttttcttccatttgtgtttccatcttccttacctatttcttagt 562

                                                                       
Query: 241 ctctattctgttcttattttctttacagctctcactaggaaagctcactaaagttttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctattctgttcttattttctttacagctctcactaggaaagctcactaaagttttatt 502

                                                                       
Query: 301 aataaagttcaatattgtttagattttttcaagatatattagttttacttaccatactgt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 aataaagttcaatattgtttagattttttcaagatatattagttttactttccatactgt 442

                                                                       
Query: 361 aaacatccatttaagagtgtattaaagggaatgggagaaattcttcttagtcctttcata 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 aaacatccatttaagagtgtattaaagggaatggaagaaattcttcttagtcctttcata 382

                                                                       
Query: 421 gtctcccaaacactttattttattgaaaagcttttagactattctgttgtttactattca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctcccaaacactttattttattgaaaagcttttagactattctgttgtttactattca 322

                                                                       
Query: 481 agtaggtttttctttttgtgtgggcgttctgtgtggcatgagatgaagaaaacaaggttt 540
           ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtagctttttctttttgtgtggtcgttctgtgtggcatgagatgaagaaaacaaggttt 262

                                                                       
Query: 541 gaaaagcctcatgggctctgttcaccccaacaaagttaagtgagttctagttatagattc 600
           |||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaagcctcatggactctgttcacagcaacaaagttaagtgagttctagttatagattc 202

            
Query: 601 c 601
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)