Query= MSMg01no132_k05.b1 MSMg01no132_k05.b1 CHROMAT_FILE:
MSMg01no132_k05.b1 PHD_FILE: MSMg01no132_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:12 2005
(670 letters)
>mm_chr1_81999201_82000271
Length = 1071
Score = 843 bits (436), Expect = 0.0
Identities = 466/476 (97%), Gaps = 2/476 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgtttgatcagccatcacctcttccctgagagggtctgctttttcctagagat 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ggaattctgtttgatcagtcatcacctcttccctgagagggtctgctttttcctagagat 417
Query: 64 aaactctcctcattcgcaactctctcatcttcaaaaggagactcaaaacattaagg-aaa 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 416 aaactctcctcattcgcaactctctcatcttcaaaaggagactcaaaacattaaggaaaa 357
Query: 123 aaaaaatcccttctttaattattctccctttaccttctcggaattaatgtgaaggggaat 182
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||
Sbjct: 356 aaaaaatcccttctttaattattccccctttaccttctcgggattaatgtgaaggagaat 297
Query: 183 ctggggaatgcagctgacagggggagcaaccaaaagcttctttcccctggcatatgtgag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ctggggaatgcagctgacagggggagcaaccaaaagcttctttcccctggcatatgtgag 237
Query: 243 aggttcttgaacacacacactttgacaaggaagatgataataataatgatagtaataata 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 aggttcttgaacacacacactttgacaaggaagatgataataataatgatagtaataata 177
Query: 303 ataaatgaaataaaagaaactgatttcaaaaggagagaaaaaattctttaagttttcaat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ataaatgaaataaaagaaactgatttcaaaaggagagaaaaaattctttaagttttcaat 117
Query: 363 aagctgttgtttttcctcaaggaatcaattgatttactaaaatttaaaaaaat-tattaa 421
|||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 116 aagctgttgttttttctcaaggaatcaattgatttactaaaattaaaaaaaaaatattaa 57
Query: 422 agtaaaaaagaaacaaagaactgttgccagctgaggaaaaagcaaagaagtcttcc 477
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 56 agtaaaaaagaaacaaagaactgttgccagctgaggcaaaagcaaagaagtcttcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1071
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1061
Effective search space: 700260
Effective search space used: 700260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_k05.g1 MSMg01no132_k05.g1 CHROMAT_FILE:
MSMg01no132_k05.g1 PHD_FILE: MSMg01no132_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:12 2005
(641 letters)
>mm_chr1_81934624_81935664
Length = 1041
Score = 1158 bits (599), Expect = 0.0
Identities = 629/639 (98%), Gaps = 2/639 (0%)
Strand = Plus / Plus
Query: 3 accgtaggagtaccgaatggtcacttgaatcttaagaatagacaaagatataattgaatc 62
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 accgtaggaataccgaatggtcacttgaatcttaagaatagacaaagatataattgaatc 262
Query: 63 aaaagctagagaaaatatgctaactgtgggcatctatttgatttaggacagtgagtctga 122
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 263 aaaagctagagaaaatatgctaattgtgggcatctatttgatttaggacagtgtgtctga 322
Query: 123 actttgaattttaatggaagaaacagaagtagattaaggagtggtgccaacagtcactgg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 actttgaattttaatggaagaaacagaagtagattaaggagtggtgccaacagtcactgg 382
Query: 183 tgattagaagtaaatgggggcttcagcagcttttctcaaatagttcatcagccccatcaa 242
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 383 tgattagaagtaaatgggggcttctgcagcttttctcaaatagttcatcagccccatcaa 442
Query: 243 aaaatgtgattaggtcctggcagcacacagccatccagagatagtcatccttttaaaggg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaaatgtgattaggtcctggcagcacacagccatccagagatagtcatccttttaaaggg 502
Query: 303 tgacctttatcctccacagcatgatgtcaagccaaagttataacagatggacttattcat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgacctttatcctccacagcatgatgtcaagccaaagttataacagatggacttattcat 562
Query: 363 tagaagaacatttaaaacaggataattagtctaaagagcaaaggaaaacaatgaatcaac 422
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 563 tagaagaacatttaaaacaggataattagtctaaagagcaaagcaaaacaatgaataaac 622
Query: 423 taagatatgattacaaatattatactaataaaggaaggcattttaatcagatttcttaac 482
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 623 taagatatgattacaaatattatactaatcaaggaaggcattttaatcagatttcttaac 682
Query: 483 tatcagtaacactaattgaatagagttttcaaaaaaaattattgcacttttctaccttaa 542
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 683 tatcagtaacactaattgaatagagttttcaaaaaaa-ttattgcacttttctaccttaa 741
Query: 543 agctcttttttaattataacatttgattcaaatttacacaggaagaaatcaggagaatgg 602
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 742 agctcttttttaattataacatttgattcaaatttacacaggaaaaaatcaggagaatgg 801
Query: 603 aaaaaaa-tcaaatgtttaagattgttcatggagggcta 640
||||||| |||||||||||||||||||||||||||||||
Sbjct: 802 aaaaaaaatcaaatgtttaagattgttcatggagggcta 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
