Query= MSMg01no132_k07.b1 MSMg01no132_k07.b1 CHROMAT_FILE:
MSMg01no132_k07.b1 PHD_FILE: MSMg01no132_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:13 2005
(594 letters)
>mm_chr1_191237884_191238878
Length = 995
Score = 998 bits (516), Expect = 0.0
Identities = 568/594 (95%), Gaps = 15/594 (2%)
Strand = Plus / Plus
Query: 1 gtggaatgcaggtgaaggttcaatgaccctcctctgaca-catttctacagtcatgatgt 59
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 gtggagtgcaggtgaaggttcaatgaccctcctctgacaacatttctacagtcatgatgt 260
Query: 60 gctcttgcaagcaagcacagtccagctgacaaagatggtggctgattgctcaaagaacct 119
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcctgcaagcaagcacagtccagctgacaaagatggtggctgattgctcaaagaacct 320
Query: 120 ccatctacaaggttcctttctttgcagagggtctgtacagtgcacaggggtcacactggt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatctacaaggttcctttctttgcagagggtctgtacagtgcacaggggtcacactggt 380
Query: 180 tactatgtgagcactgagaacttccttacatgtttatacactctgaatagtaagtctaca 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctatgtgagcactgagaacttccttacatgtttatacactctgaatagtaagtctaca 440
Query: 240 gtagaaactcaatacatagtttgtcccacagagtccaggtggatgtgcctaaggtcactg 299
|||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagaaactcaa--------------cacagagtccaggtggatgtgcctaaggtcactg 486
Query: 300 ccctttgcaatgaatacactttcaagtgttctccatctgtgtcctctaccgagccaacca 359
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 487 ccctttgcaatgaatacactttcaagtgttctccatttgtgtcctctagtgagccaacca 546
Query: 360 ccactcaatgctacgctgctcaggctgcccgtgtccccaagagcatgccatgctaatgtt 419
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ccactcaatgctacactgttcaggctgcccgtgtccccaagagcatgccatgctaatgtt 606
Query: 420 ctctctagaaaagagggtctatggcttatgatgatttttaaaaaatcagtgcaaactccg 479
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 607 ctctctagaaaagagggtctatggcttatgatgattttttaaaaatcagtgcaaactctg 666
Query: 480 tgctatagagaacatagggcagtccttggccttaattttcatttcttttataccatactc 539
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tgctgtagagaacatagggcagtccttggccttaattttcatttcttttataccatactc 726
Query: 540 tgggtcatgaatccaatggtgccatttaaaaaacaacagtaataccccaggcct 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tgggtcatgaatccaatggtgccatttaaaaaacaacagtaataccccaggcct 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 995
Length adjustment: 10
Effective length of query: 584
Effective length of database: 985
Effective search space: 575240
Effective search space used: 575240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_k07.g1 MSMg01no132_k07.g1 CHROMAT_FILE:
MSMg01no132_k07.g1 PHD_FILE: MSMg01no132_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:13 2005
(555 letters)
>mm_chr1_191339133_191340088
Length = 956
Score = 814 bits (421), Expect = 0.0
Identities = 445/457 (97%), Gaps = 9/457 (1%)
Strand = Plus / Minus
Query: 1 ctgtgctgtttaacccactggaagagagtcggtgtgtgggcggctttctatcaaggattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctgtgctgtttaacccactggaagagagtcggtgtgtgggcggctttctatcaaggattc 396
Query: 61 tgagcacgcctgcctttcccaggtttagaacagcacactctatttcttttcatg-ccccc 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 395 tgagcacgcctgcctttcccaggtttagaacagcacactctatttcttttcatgcccccc 336
Query: 120 cccccagctttttccattttctgggcatttgtttcattctctgaatttttgtcaattgaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cccccagctttttccattttctgggcatttgtttcattctctgaatttttgtcaattgaa 276
Query: 180 gcacaattagggtttgacaaagatgttttaatatcattttcagcatgggcactaagaaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gcacaattagggtttgacaaagatgttttaatatcattttcagcatgggcactaagaaag 216
Query: 240 acagaggtgtgcttattaaa------acaaagtgaacagacagagaaatggacagaaaga 293
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 215 acagaggtgtgctta--aaaaaacagacaaagtgaacagacagagaaatggacagaaaga 158
Query: 294 caagcagacaggtggacagacccaagagcatgagtgtgaatccctctcagagcgcgcctg 353
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct: 157 caagcagacaggtggacagacccaagagcatgagtgtgaatccctctcagagggtgtctg 98
Query: 354 aacgctggtttagttctttgaggtttgttgcagtggaggaatcagggcaatcattgggaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 aacgctggtttagttctttgaggtttgttgcagtggaggaatcagggcaatcattgggaa 38
Query: 414 caacagaagtatcgggttgttgagtcagcattgttaa 450
|||||||||||||||||||||||||||||||||||||
Sbjct: 37 caacagaagtatcgggttgttgagtcagcattgttaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 956
Length adjustment: 10
Effective length of query: 545
Effective length of database: 946
Effective search space: 515570
Effective search space used: 515570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
