BAC Information

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BAC

Clone NameMSMg01-132L07
Chromosome1 (Build37)
Map Location 77,910,722 - 77,911,136
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
Downstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132L07.T7 (MSMg01no132_l07.b1)MSMg01-132L07.TJ (MSMg01no132_l07.g1)
ACCAG339875AG339876
length699691
length of high quality
(start - end)
466 (71 - 536)290 (68 - 357)
definitionCHROMAT_FILE: MSMg01no132_l07.b1 PHD_FILE: MSMg01no132_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:18 2005CHROMAT_FILE: MSMg01no132_l07.g1 PHD_FILE: MSMg01no132_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAGCCGCGG
AATTCATTTCTTTTCGGGACAAACTCCCACATAGGTTGTCCAGTCCCAAG
TGGCTAGCCCATGTGTACATGAACAAGACTAAAGATAAGTGCTTGTTTCA
ATAATAATTAAAGAAGAGACCGTGGATGGGAGAGGAGTTGGAAGATGGAG
TGAGAAATGGAAGTAAGGGGGACTCAGGGCTCATGTACAAAATCCTCGAA
AAGAAGAAAAATTTAAAAAGTAAAAATTACTGGTACTCATTACACGGAGC
ACCTCTTGAAACTGATCGGTTTCCTGTCCTTATTCGGTGAGTTGAAATTA
AATTGTTATTTGCTTTGATATATACTTGACATTTTGAAAATGTAGGCTAA
ATAATCCAATCAAAAAATTAGGCACATCAACAGATGGTACCCAGTGTCAC
CCCCTGGCCTCCACATATGCATAGACCACATGTAAACCCTCTGCCCTTGT
ACATGGTCACCCACATACATGCAAAACACACACACACACCCTCACACACA
CATACACACACACCCACTCTCTCGATTATGGCGGTTTGAATGAAATGTCC
CCATAAATCTCTGCTATTTGAATACTTGGTGTCCCTGACGCCCTTGTCTC
GTGGCTGTTTAGAAAAGACTAGCAGGTTTGCTGCTAGAAGTCTGTTATN
CGATGAAGTGNTAGGCTGGCGGCGCCTGTTCACAAATTGAGGTGACCTAT
AGAAGTTCCGCAAAAATCTCTGACTCATTTAGTTTTCTTTTCAGAACAAT
CAGGTGAGGCGTTAGGAATCTAGCTGAAGTGATCCCTCTATAGCATGCAC
TGGGCATGGTGAAGCATGCCTGTAACCAGCACCTTCAGGAAGGAGGAGGA
AAGGTCAGAAGTTCAAGGTTATCCTTGGGTACCTACCTAGCTTGTGGTGA
GCCTGGATTAAATGAAATTCTGTCTCAAAATCAACATCAACAAAAGCTAA
AACAACATCAGATTTTATAACTTTTAACACAGGACTTAAGATACTTTCGC
CTTGATGAGTCCCACCCCACACGAAAGGTCTTTCCCAGAATTGATGACCA
GGAACTGAATTTTTATAGTGATGCATAGTTTTCCTTTCTGCTAGTTAGTT
ACACATCAAGGGACATATTTCCGAACTTTTATTTTCAAATACCTGAAATT
TAAAGCTCAAGTTAATTTTGGAGATCAATGTCACATCTAACTTACTGATA
AATTGTAACTGGTCCCTTGGAAGAACTAGATGAAATTTAAATGTATAGGT
AGGAAGACACCTATAGACACCTGATGGGTAACATAGAACTAAGTACTGCT
CACCATCATTGAATACGGCGAGGCAGTGTGGGCAGATTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_l07.b1 MSMg01no132_l07.b1 CHROMAT_FILE:
MSMg01no132_l07.b1 PHD_FILE: MSMg01no132_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:18 2005
         (466 letters)



>mm_chr1_77910522_77911387
          Length = 866

 Score =  795 bits (411), Expect = 0.0
 Identities = 414/415 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaactcccacataggttgtccagtcccaagtggctagcccatgtgtacatgaacaagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaactcccacataggttgtccagtcccaagtggctagcccatgtgtacatgaacaagact 260

                                                                       
Query: 61  aaagataagtgcttgtttcaataataattaaagaagagaccgtggatgggagaggagttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagataagtgcttgtttcaataataattaaagaagagaccgtggatgggagaggagttg 320

                                                                       
Query: 121 gaagatggagtgagaaatggaagtaagggggactcagggctcatgtacaaaatcctcgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagatggagtgagaaatggaagtaagggggactcagggctcatgtacaaaatcctcgaa 380

                                                                       
Query: 181 aagaagaaaaatttaaaaagtaaaaattactggtactcattacacggagcacctcttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaagaaaaatttaaaaagtaaaaattactggtactcattacacggagcacctcttgaa 440

                                                                       
Query: 241 actgatcggtttcctgtccttattcggtgagttgaaattaaattgttatttgctttgata 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 actgatcggtttcctgtccttattcggtgagttgaaattaaattgttatttgctttgaca 500

                                                                       
Query: 301 tatacttgacattttgaaaatgtaggctaaataatccaatcaaaaaattaggcacatcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatacttgacattttgaaaatgtaggctaaataatccaatcaaaaaattaggcacatcaa 560

                                                                  
Query: 361 cagatggtacccagtgtcaccccctggcctccacatatgcatagaccacatgtaa 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagatggtacccagtgtcaccccctggcctccacatatgcatagaccacatgtaa 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)