Query= MSMg01no132_l17.b1 MSMg01no132_l17.b1 CHROMAT_FILE:
MSMg01no132_l17.b1 PHD_FILE: MSMg01no132_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:20 2005
(598 letters)
>mm_chr1_77898824_77899821
Length = 998
Score = 1015 bits (525), Expect = 0.0
Identities = 582/607 (95%), Gaps = 13/607 (2%)
Strand = Plus / Plus
Query: 4 gaattctttattttg-ttcactactctgtggagcacgcatgtgtgtgtgtgtgtgtgtgt 62
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaattctttattttgatttactactctgtggagcacgcatgtgtgtgtgtgtgtgtgtgt 252
Query: 63 gtgtgtgtgtgtgtgtgtgt----------acaaacctatcataacatgtgtgggaggtc 112
|||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 253 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacaaaccgatcataacatgtgtgggaggtc 312
Query: 113 agatgacaacttacacgttttgcttctcagaatccaccatgtgttctgggaaccaaaccc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agatgacaacttacacgttttgcttctcagaatccaccatgtgttctgggaaccaaaccc 372
Query: 173 tagttgttaggctttcttggcaagtgattttacccactgagccaactagtctatctggtg 232
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 373 tagttgttaggctttcttggcaagtgattttaccaactgagccaactagtctatctggtg 432
Query: 233 cacagtcctttactccccaaagaactcctgtcaaactgggtcacaatattatctaatggt 292
|||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 433 cacaatcctttactccccaaagaactcctgtcaaactgggtcacaatagtaactaatggt 492
Query: 293 taaaaatcaaaagagaacttccaaaccaggggatcttagagactgattatacctcacagt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 taaaaatcaaaagagaacttccaaaccaggggatcttagagactgattatacctcacagt 552
Query: 353 aaaagggtaactgctataaacaccttcccccatctgcaaatccaaatcttgctcagtgaa 412
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 553 aaaagggtaactgctataaatagtttcccccatctgcaaatccaaatcttgctcagtgaa 612
Query: 413 tagagaaagaagcacattgaagagttctacactaaaagagtttaagtcaccaccttcaag 472
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tagagaaagaatcacattgaagagttctacactaaaagagtttaagtcaccaccttcaag 672
Query: 473 gaagtacccacttgacctacacttaaagcccagtctacctgcaatagtaaatta-ccccg 531
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 673 gaagtacccacttgacctacacttaaagcccagtctacctgcaacagtaaattaacccc- 731
Query: 532 ctggctctgctcagccagatgaataaggagaacctgttccctgctttagcctgggaacat 591
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 732 ctggctctgctcagccagatgaataaggagaacctgttctctgctttagcctgggaacat 791
Query: 592 ctcctgg 598
|||||||
Sbjct: 792 ctcctgg 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_l17.g1 MSMg01no132_l17.g1 CHROMAT_FILE:
MSMg01no132_l17.g1 PHD_FILE: MSMg01no132_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:20 2005
(288 letters)
>mm_chr1_78076220_78076907
Length = 688
Score = 540 bits (279), Expect = e-158
Identities = 285/287 (99%)
Strand = Plus / Minus
Query: 1 atgggaaaattattagcacagcatctgtaggacataattacaggcctgtgttctggcctt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 440 atgggaaaattattagcacagcatctgtaggacataattacagggctgtgttctggcctt 381
Query: 61 gcacggagggctgggagttgaaagctgacatttttcctttccgtgatttggaaatattca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcacggagggctgggagttgaaagctgacatttttcctttccgtgatttggaaatattca 321
Query: 121 tgaatcttctagcacagagttgctctgatttttattggttgttatttaatgacacaagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgaatcttctagcacagagttgctctgatttttattggttgttatttaatgacacaagtt 261
Query: 181 attcttatgaatacacaaaagtatacgtccaattcaaattaagcgaaggcaaaggcacgg 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 260 attcttatgaatacacaaaagtatatgtccaattcaaattaagcgaaggcaaaggcacgg 201
Query: 241 tatatttaatatttatttattcacagtgtctttcattttctggctta 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tatatttaatatttatttattcacagtgtctttcattttctggctta 154
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
