Query= MSMg01no133_c05.b1 MSMg01no133_c05.b1 CHROMAT_FILE:
MSMg01no133_c05.b1 PHD_FILE: MSMg01no133_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:52 2005
(509 letters)
>mm_chr1_52692059_52692967
Length = 909
Score = 922 bits (477), Expect = 0.0
Identities = 501/509 (98%)
Strand = Plus / Plus
Query: 1 gttctggctgcccagtttagctctggttcctgttcagaggggcaggagatacagcatgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 201 gttctggctgcccagtttagctctggttcctgttcagaggggcaggagatagagcatgcg 260
Query: 61 gtatgggaaggccaggcctgggaccttccattctctcctctgtggctcaacaggtggggc 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 gtatgggaaggccaggcctgggaccttccattctctcctctgtggttcaacaggtggggc 320
Query: 121 ctccagggtgcgtcattgtattctcacatcaagtacttcctggttttactttgcattctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccagggtgcgtcattgtattctcacatcaagtacttcctggttttactttgcattctt 380
Query: 181 tgacctctttcttttctaaagctaacttctttttatttttttaaaagatttatttattta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacctctttcttttctaaagctaacttctttttatttttttaaaagatttatttattta 440
Query: 241 atttatatgagtacactgtcgctgtcttcaggcacaccagaaaagggcatcagattccat 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 atttatatgagtacactgtcgctgtcttcaggcacaccagaagagggcatcagattccat 500
Query: 301 gacagatggttgtgagccaccatgtggttgctgggatttgaactcaggacctctagcaga 360
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 501 gacagatggttgtgagccaccatgtggctgctgggaattgaactcaggacctctagcaga 560
Query: 361 gcagccagtgctcttaaccactgagccatctctccagccctaaagctaacttctagtatt 420
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 gcaaccagtgctcttaaccactgagccatctctccaaccctaaagctaacttctagtatt 620
Query: 421 tagacatccaaagactgtttcttccagcatgctgcccttggccttgaactgtgtgcctct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagacatccaaagactgtttcttccagcatgctgcccttggccttgaactgtgtgcctct 680
Query: 481 cagttatgcccaagaatgcctctgccttg 509
|||||||||||||||||||||||||||||
Sbjct: 681 cagttatgcccaagaatgcctctgccttg 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_c05.g1 MSMg01no133_c05.g1 CHROMAT_FILE:
MSMg01no133_c05.g1 PHD_FILE: MSMg01no133_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:52 2005
(500 letters)
>mm_chr1_52847521_52848418
Length = 898
Score = 890 bits (460), Expect = 0.0
Identities = 490/500 (98%), Gaps = 2/500 (0%)
Strand = Plus / Minus
Query: 1 actcaaaaccacacaaacagattaatgctacacagtgtcttcagatacacacgagacagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 698 actcaaaaccacacaaacagattaatgctacacagtgtcttcagatacaca-gagacagg 640
Query: 61 gtagacaccaccgctgtgttgccagatgaatttctgtgttatgatagaagaattacagga 120
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 639 gtagataccaccgctgtgttgccagatgaatttctgtgttaggatagaagaattacagaa 580
Query: 121 caacctgtgcagaatgttcagtgggatgattggcagacatggccaggatcaactccatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 caacctgtgcagaatgttcagtgggatgattggcagacatggccaggatcaactccatct 520
Query: 181 ccttctaaatactgccagggtcagctttcttcctcctgatagctccctgccttaccattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ccttctaaatactgccagggtcagctttcttcctcctgatagctccctgccttaccattg 460
Query: 241 attccatcacagcctggagaatggccaggaggctctgtgccgaagcaccgactccagagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 attccatcacagcctggagaatggccaggaggctctgtgccgaagcaccgactccagagc 400
Query: 301 acagcgagtttgaacagaggtggtatcttttgctctccattggaaaaaactcgcagtctc 360
|||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct: 399 acagcgagtttgaacagaggcggtatcttttgctctccattagaaaaaacttgcagtctc 340
Query: 361 tgtcacataggactgtctgctctaatgaatcttcagcttacttcagagaaggatggagct 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 339 tgtcacataggactgtctgctctaatgaatcttcagcttacttcagagaaagatggagct 280
Query: 421 aaagtttaagcctctggagtttattctggttttcttcagaccaagtatgttttgatagtt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 279 aaagtttaagcctctggagtttattctggttttcttcagaccaagtatgttttggtagtt 220
Query: 481 tttttaaaaggtcattaaaa 500
|||| |||||||||||||||
Sbjct: 219 tttt-aaaaggtcattaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 898
Length adjustment: 10
Effective length of query: 490
Effective length of database: 888
Effective search space: 435120
Effective search space used: 435120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
