BAC Information

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BAC

Clone NameMSMg01-133K08
Chromosome1 (Build37)
Map Location 128,415,384 - 128,415,824
singlet/doubletsinglet
Overlap geneE030049G20Rik
Upstream geneSlc35f5, Lypd1
Downstream geneLOC383559, Mgat5, LOC667090, Tmem163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133K08.T7 (MSMg01no133_k08.b1)MSMg01-133K08.TJ (MSMg01no133_k08.g1)
ACCAG340567AG340568
length690703
length of high quality
(start - end)
494 (68 - 561)503 (70 - 572)
definitionCHROMAT_FILE: MSMg01no133_k08.b1 PHD_FILE: MSMg01no133_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:30 2005CHROMAT_FILE: MSMg01no133_k08.g1 PHD_FILE: MSMg01no133_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TACCTTGTGCCTAAGACAGGATTTCTAGCAAATTCTGAAAGGAGTGCGGA
CATACCTGTGTCATCTTACACCATGTTTAATGGGAAGCATTACATTCAGC
ATTAATAAGTACAAAAATCAAGACATTCATCAACTCTGAAAACACGGAAG
ACATTCTGCGCACTGTAGTATTATATCAATAGCCAAGAGTTTTCATTCTT
TACATCAAAACAAGCAAGGAATTCCATTTCATTGGTATAAAATTTTGCTT
TTGTTTTTAGTAGATAGTAAAATACATATACACTGAAGAATTGTTTTTAA
ACAAATAGCTGTGATTTATAATCAGTTTGTGTTTTATTTTATATACCTGT
ATATCTATGGTCATATAAAATGTCTGTCTAAAAGGGGTCCTGATTAAAAA
GAATAATAATTAGCCCTGAGTGAGAACACAGAGTTAAGAAGAAAAATGCT
CAAGAGCTGGTTTTAATTTTGTCCAACCAGTTTTTCAGAGGTTTCAAACA
GACCAAGTCTGTCTGATTGCTTTTAAAATCTTTGCCAAACCAGGAGATCT
CACAAATGGACACACATAACTGACAGAACTGTCCTGCACACAGCTCAGCT
CCTCCATATAATATGAACTCTGCCACAGCAATGCTGTCCC
TCGATGAAGTGTGAGGCCTGGCGGCCGCCTGTTTCTAAAAGGGAGGTGAC
CTATAGAATTATCTGCGGAATTCTTTCCGTAACACAGACAGAATTCCACT
TTTAGATCATCTCAGTGGGCGAAGGTGCTTGTTGTTAAGCTTGGTGACAT
GAGTTCCGTTTCTGGGACCCACATAGGAGAAGGAGAGACCTGATTCCCAT
TGTTTGCCTTCAGACCTCCACAGATACAGAATGGCACATACACATATACA
CATACAGACTATGTTAAAGTGATATTTTTTTAAAACTTGCTTTTGTATTT
ATTTATTTATTGTTTGTTTGTTTGTTTGTTTCTGTCTCTATGTCTAAAAT
AATATTAAAACTGCCTGCTGGAAGCTATGAGAAGTTTGTAATGCTCTATT
GAAAAGGTTGGCTTGCACTTGTAAAGCACAGGTACGAACAAGAATTAATC
CTGTTTAGCATCAGTCTCTGACTATCCCAGAGATTCTCATCCCATGTATC
TTGGCTCTTATTTTATTCAGCCTCTTCACGTGTTAGTATGCCTCTTTCCT
CATGGGGTTAATGCACGTATACTAAGGAGCCATGAGTATTAAATGCTTGC
CTCTGCTGGAATCATAGACCTCCACTGGGGAGGGGGATTTTAATTGGCAA
CATGCAAACTTTCTCTGCATGCATCCTTAATAGTGGACACAGAATAAATT
ACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_k08.g1 MSMg01no133_k08.g1 CHROMAT_FILE:
MSMg01no133_k08.g1 PHD_FILE: MSMg01no133_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:30 2005
         (503 letters)



>mm_chr1_128414922_128415824
          Length = 903

 Score =  841 bits (435), Expect = 0.0
 Identities = 441/445 (99%), Gaps = 4/445 (0%)
 Strand = Plus / Minus

                                                                       
Query: 56  gtgcttgttgttaagcttggtgacatgagttccgtttctgggacccacataggagaagga 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gtgcttgttgttaagcttggtgacatgagttccgtttctgggacccacataggagaagga 844

                                                                       
Query: 116 gagacctgattcccattgtttgccttcagacctccacagatacagaatggcacatacaca 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 gagacctgattcccattgtttgccttcagacctccacagatacagaatggcacatacaca 784

                                                                       
Query: 176 tatacacatacagactatgttaaagtgatatttttttaaaacttgcttttgtatttattt 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tatacacatacagactatgttaaagtgatatttttttaaaacttgcttttgtatttattt 724

                                                                       
Query: 236 atttattgtttgtttgtttgtttgtttctgtctctatgtctaaaataatattaaaactgc 295
           |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 attta----ttgtttgtttgtttgtttctgtctctatgtctaaaataatattaaaactgc 668

                                                                       
Query: 296 ctgctggaagctatgagaagtttgtaatgctctattgaaaaggttggcttgcacttgtaa 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ctgctggaagctatgagaagtttgtaatgctctattgaaaaggttggcttgcacttgtaa 608

                                                                       
Query: 356 agcacaggtacgaacaagaattaatcctgtttagcatcagtctctgactatcccagagat 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 agcacaggtacgaacaagaattaatcctgtttagcatcagtctctgactatcccagagat 548

                                                                       
Query: 416 tctcatcccatgtatcttggctcttattttattcagcctcttcacgtgttagtatgcctc 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tctcatcccatgtatcttggctcttattttattcagcctcttcacgtgttagtatgcctc 488

                                    
Query: 476 tttcctcatggggttaatgcacgta 500
           |||||||||||||||||||||||||
Sbjct: 487 tttcctcatggggttaatgcacgta 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)