BAC Information

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BAC

Clone NameMSMg01-133K11
Chromosome1 (Build37)
Map Location 154,336,696 - 154,337,209
singlet/doubletsinglet
Overlap geneGlt25d2
Upstream geneRnf2, Niban, Edem3, 1700025G04Rik, LOC668076, 5730449L18Rik
Downstream geneRgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133K11.T7 (MSMg01no133_k11.b1)MSMg01-133K11.TJ (MSMg01no133_k11.g1)
ACCAG340573AG340574
length689687
length of high quality
(start - end)
503 (68 - 570)514 (70 - 583)
definitionCHROMAT_FILE: MSMg01no133_k11.b1 PHD_FILE: MSMg01no133_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:31 2005CHROMAT_FILE: MSMg01no133_k11.g1 PHD_FILE: MSMg01no133_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATTTGCGGCGCTATACGATCACTATTCCAAGAGGATCCGCGGAATTCT
CTCAGTCTCGCCAAGAGGTTTATCAAACTGGGTGATTCTAGTTCCTGTCA
AATTGATGATCAAATACCAAATACTGCAGTCAACTTGACACAAGCATATC
ACTTGTAGCCCACAGTTACCCACCCCTTGTCCCTATCAGCTCACAGCCAC
TTCATAAAGAAAAATCTATTCAGTCCACCTTCAAATGTTCCCGTGGTCTC
TAACAGCCCCAATACCGTTTAAAGCCCAAGTCTTCTCTGCAATTCAAGAC
AATCTCTTAACTCTGAGCACTTATAAAATCAAAATTGAGTGATATAGTTC
CAATATCCAATGGCCCAGGGTAAAAATTCCTGTTCCGACAGGAAGGGATG
GAGATACAGCAAAGACCACATCAAAATAAGGGGAAGGCCTGACTGAGAAA
ACACCAAAGCCTAAAGCTCCATTCTGAGCACCCGGGGTTCCTCATAGAAT
CACCTATACTCCATAGGTCTTGGTTAGCCCCGCCTCTCATACTCTGCAGC
TTGCAGTGTATATACCTTCCCTCAGGCTAACTTGATTCTGTGTCTGCAAT
TTCTTCAACTGAAGCTCTAAGTTTTTATCACTTTCGGAGCTTCATGCAAC
AGCCTCTAGGGGGCTCCTTTCAGGGCACCCCAACCCTGA
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGGGCAGATGAATGTCTGTATTTCAGCCTA
GACATAGTTGTAGCTATCAAATGTCAGACTGAGAAGTAGAGATCCAGGGC
TGGCCACGGCTGGTCACGGCTGGTCACAGTTGACTACGGCTGGCCTGGTT
ACTGTTACAATGAGCTAGACAAGGTTGCGCTGGCTCCTGGGTCACTCACT
CATTGCTTCTATCTGTACATGGATGAGGTTCTCGACGTCCTCCTGCAGTG
TCTGGTGGGGCTTCAGAGGGATGGGCAGGTAGCCATAGTGTTCCTTGTTG
CACAGGTACATCTGGATGCCTGAAGAGGTGAGAGACCAGAGTCAACCAAT
CAAAAAACACACTAGGCAAGAGAGGGAGAATCCATGGGGCTAACATGAGT
TCAATGCTGAAGTCCAACAAGTGGCTTCTTTGGGGAGCCGTCTATAGAGC
TTTACAATATTCTTTTATTAAAAAGTTGAAACTGATTTGGTGGGGGGCTC
TTAAAAACTCTGGGCCATTCTTCAGTTCAGAGGAAATTGACTTTTCTTTC
TAAAGAAAAAAAAGCACATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GAAGCAATCAGACAGGAAGAAGAATTCCCTTCCAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_k11.g1 MSMg01no133_k11.g1 CHROMAT_FILE:
MSMg01no133_k11.g1 PHD_FILE: MSMg01no133_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:31 2005
         (514 letters)



>mm_chr1_154336496_154337409
          Length = 914

 Score =  948 bits (490), Expect = 0.0
 Identities = 508/514 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagggcagatgaatgtctgtatttcagcctagacatagttgtagctatcaaatgtcagac 60
           ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 714 aagggcagatgaatgtctgtacttcagcctagacatagttgtagctatgaaatgtcagac 655

                                                                       
Query: 61  tgagaagtagagatccagggctggccacggctggtcacggctggtcacagttgactacgg 120
           ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 654 tgagaagcagagatccagggctggccatggctggtcatggctggtcacagttgactacgg 595

                                                                       
Query: 121 ctggcctggttactgttacaatgagctagacaaggttgcgctggctcctgggtcactcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctggcctggttactgttacaatgagctagacaaggttgcgctggctcctgggtcactcac 535

                                                                       
Query: 181 tcattgcttctatctgtacatggatgaggttctcgacgtcctcctgcagtgtctggtggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tcattgcttctatctgtacatggatgaggttctcgacgtcctcctgcagtgtctggtggg 475

                                                                       
Query: 241 gcttcagagggatgggcaggtagccatagtgttccttgttgcacaggtacatctggatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gcttcagagggatgggcaggtagccatagtgttccttgttgcacaggtacatctggatgc 415

                                                                       
Query: 301 ctgaagaggtgagagaccagagtcaaccaatcaaaaaacacactaggcaagagagggaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ctgaagaggtgagagaccagagtcaaccaatcaaaaaacacactaggcaagagagggaga 355

                                                                       
Query: 361 atccatggggctaacatgagttcaatgctgaagtccaacaagtggcttctttggggagcc 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 atccatggggctgacatgagttcaatgctgaagtccaacaagtggcttctttggggagcc 295

                                                                       
Query: 421 gtctatagagctttacaatattcttttattaaaaagttgaaactgatttggtggggggct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gtctatagagctttacaatattcttttattaaaaagttgaaactgatttggtggggggct 235

                                             
Query: 481 cttaaaaactctgggccattcttcagttcagagg 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 cttaaaaactctgggccattcttcagttcagagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)