CAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGCGGCGGAATT
CCCAGGCTATCCCCGAAGTCTTCCATTATGACTTTGATGCATTTCATTTG
ACCATTCTGTTCACAATCACCGTACAACATCTGCTTCTATATTCTATTGT
CAGCTTTCATCTACCTAAAATCCAAAAAAGCAGAGAATATTTCAGCAAAC
AGATAAGATTCCAGGCCTACCAAATGGATCAGATTGTGCAGTCTCATTTC
TGCTGGTCATTTTAATCCCATTGCCCAAAGAAAAAGTAGTCTCCATATGA
ACTTTGACCATTAGTAGGACCATTAGCTACCTATCACCCTGTTAAGTGTT
TCTTAATTCATCAGGGGATGCCTGATACAGAGAGAGAAAGGAATAATACT
TAAACGTGTAACATCACACTTATGCTTCAAACAAGAAAAGACAATTTGCA
AATCTAATTCTAGACTGATGGGGCATGTGCATGCATGTGATATGATGAGG
ACATGGGAGAGAGTTGATAGAACAAGTCAGAGTAGATGAGAGAGGCTTCC
GCTGTTCTCCAAGGCCTGTGTTCCCAGCCATCCTTGTCTTAGGATATAGT
GTGGTCCCTGACAGGCCTGACTTAAAACCCACAGAAAGCTGGACCCAGAC
TTTGTCCAAAATAGCATAATAGAGCAGAAAGAC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCGAAATTCTCACCTGAGGAATACCGAATGGCAGAG
AAACACCTGAAAAAATGTTCAACACCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCA
AAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCTTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAATTGTTTTTAGTACTATCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAG
AACACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATTTACACAATGGAATACTACTCAGGTATTAAAAAATGAATTTAT
GAAATTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAAG
TAACCCAATCACAAAGGAACTCGCACAATATGTACTCACCAATCACTTTT
TAAGACCACAAGATTTTGGNTTCTTTCTCTTTCTTCT

Query= MSMg01no133_k23.b1 MSMg01no133_k23.b1 CHROMAT_FILE:
MSMg01no133_k23.b1 PHD_FILE: MSMg01no133_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:33 2005
         (606 letters)



>mm_chr1_3474185_3475191
          Length = 1007

 Score = 1120 bits (579), Expect = 0.0
 Identities = 600/607 (98%), Gaps = 1/607 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccattatgactttgatgcatttcatttgaccattctgttcacaatcaccgtacaacat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 807 ttccattatgactttgatgcatttcatttgaccattctgttcacaatcactgtacaacat 748

                                                                       
Query: 61  ctgcttctatattctattgtcagctttcatctacctaaaatccaaaaaagcagagaatat 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 747 ctgcttctatattctattgtcagctttcatctacctaaaatccaaacaagcagagaatat 688

                                                                       
Query: 121 ttcagcaaacagataagattccaggcctaccaaatggatcagattgtgcagtctcatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttcagcaaacagataagattccaggcctaccaaatggatcagattgtgcagtctcatttc 628

                                                                       
Query: 181 tgctggtcattttaatcccattgcccaaagaaaaagtagtctccatatgaactttgacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tgctggtcattttaatcccattgcccaaagaaaaagtagtctccatatgaactttgacca 568

                                                                       
Query: 241 ttagtaggaccattagctacctatcaccctgttaagtgtttcttaattcatcaggggatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttagtaggaccattagctacctatcaccctgttaagtgtttcttaattcatcaggggatg 508

                                                                       
Query: 301 cctgatacagagagagaaaggaataatacttaaacgtgtaacatcacacttatgcttcaa 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cctgatacagagagggaaaggaataatacttaaacgtgtaacatcacacttatgcttcaa 448

                                                                       
Query: 361 acaagaaaagacaatttgcaaatctaattctagactgatggggcatgtgcatgcatgtga 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acaagaaaagacaatttgcaagtctaattctagactgatggggcatgtgcatgcatgtga 388

                                                                       
Query: 421 tatgatgaggacatgggagagagttgatagaacaagtcagagtagatgagagaggcttcc 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 387 tatgatgaggacatgggagagagttgatagagcaagtcagagtagatgagagaggcttcc 328

                                                                       
Query: 481 gctgttctccaaggcctgtgttcccagccatccttgtcttaggatatagtgtggtccctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gctgttctccaaggcctgtgttcccagccatccttgtcttaggatatagtgtggtccctg 268

                                                                       
Query: 541 acaggcctgacttaaaacccacagaaagctggacccagactttgtccaaaa-tagcataa 599
           |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 267 acaggcctgacttaaaacccacagaaaggtggacccagactttgtccaaaaatagcataa 208

                  
Query: 600 tagagca 606
           |||||||
Sbjct: 207 tagagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1007
Length adjustment: 10
Effective length of query: 596
Effective length of database: 997
Effective search space:   594212
Effective search space used:   594212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)