BAC Information

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BAC

Clone NameMSMg01-133L11
Chromosome1 (Build37)
Map Location 87,424,060 - 87,424,300
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040213, LOC100039794
Downstream geneEG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133L11.T7 (MSMg01no133_l11.b1)MSMg01-133L11.TJ (MSMg01no133_l11.g1)
ACCAG340618AG340619
length703704
length of high quality
(start - end)
236 (73 - 308)88 (126 - 213)
definitionCHROMAT_FILE: MSMg01no133_l11.b1 PHD_FILE: MSMg01no133_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:36 2005CHROMAT_FILE: MSMg01no133_l11.g1 PHD_FILE: MSMg01no133_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:36 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAACGAGGATCCGCGGA
ATTCTGTTTTGCATAGTAACTCAGATGCGCTACTATGCATAAATAATGTT
GGGCAGTGTTTTTGTTGCTACAAAGGAAGTAATATATTTTTTTTCAGTAC
TGCAGATGAACCTCGGGCTTTGAATATGCCTGATTATATATCTCTATTTA
TTTTTTAGAACTTTGACTCAAGGTTTTGCTAAGTTACTCACACCAGTGTG
GAACTCATTGTATAGGTTAGGCTGACCTTGAACTTGTGAGCCTCTGAGTG
ACTGAGGTTACAGTTCTAGACCACCAGGACTATTTCATAATAAAATGTGG
TTTATAAGCTTTCAAACTTGTGGAAATATATAAAGGATAAGACCCCTCAG
CTGCCCCCATATACTTAGCCCACTCCTTGGGTTCAATCTTCCTTATATTA
TTTATTTTTAATTTTAAGGCACTGTCTCTTGGTCTTTTTTATTATGTTGT
CCAGGCTGATCTGAAACTTGCTATGTAAATCTGCCTGGACTTGGACTTAC
AATAGAGATCCATCTGCCTCTGTCTCCCCAGCACAGGGATTAAAGGTGCA
CTATACCATACCTGGGTCTTTCTTATTGCCTACAATTACATTTATCGGCC
GCGTGCGTGTGTGTGCTTGCCTGCGCGCGTGCTTGTGCGTCTACGTGTCG
CCA
AGTGCTCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATTCCCAGGAACCACATGGTGACTCTC
AACTACCTGTAATGGCACCTGATGCCCTCTTCTGGTGTGTCTGAAGACAG
TGACAGTGTACTCATATACATAAAATAAATAATTCTTTTTAAAAAAAGAA
TAAGGAAAAAGAGCTAGTGGCCTATAGTAAAGGCAGAAAGCATAAGGAAG
AACTTCTGGGAAGAGATAAGAACTCTGGTAAAGAGACAACCGGCCACCTT
CCTGGTGAGAGCTTTTGTGTCCGCCTCAGCCCGAGAGGTTTCTGCATCAT
TTAACATCAGTTCCAANACTGGACCCCGGATTTAGAGTAGTGGAGGATGA
ATGGTTGAGGGCGAAAAAATAATAAAACAGCTGGGTGTGGGAGGGGAGAC
AGTTATATAGTTTTTGACGTGGTTTCATCTTCTTTTCTAGACATCTGGTA
CTTCTCCTGCCGTGATTTACATATCTTCCGATTCCGCGCCATCTTTTTTT
TTAAATAATTGGTCCACATTCCGGCGAGAGTCACTTAGTTTCTGACGTTC
AGTCTTCTTTCTAATCCTCAATACCGGCCTTCTTCCTGGCCCTTTTATTT
ACCTTTTCGGCTAATATACCATATTGGTTATCCCTCTTCGGCCACGAGGT
ATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_l11.b1 MSMg01no133_l11.b1 CHROMAT_FILE:
MSMg01no133_l11.b1 PHD_FILE: MSMg01no133_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:36 2005
         (236 letters)



>mm_chr1_87423860_87424500
          Length = 641

 Score =  418 bits (216), Expect = e-121
 Identities = 234/242 (96%), Gaps = 7/242 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatgcgctactatgcataaataatgttgggcagtgtttttgtt-gctacaaaggaagta 59
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 201 agatgcgctactatgcataaataatgttgggcagtgtttttgttag-tacaaaggaagta 259

                                                                       
Query: 60  atatatttttttt-cagtactgcagatgaacctcgggctttgaatatgcctgattatata 118
           ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atacatttttttttcagtactgcagatgaacctcgggctttgaatatgcctgattatata 319

                                                                       
Query: 119 tctct----atttattttttagaactttgactcaaggttttgctaagttactcacaccag 174
           |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctctttctatttattttttagaactttgactcaaggttttgctaagttactcacaccag 379

                                                                       
Query: 175 tgtggaactcattgtataggttaggctgaccttgaacttgtgagcctctgagtgactgag 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtggaactcattgtataggttaggctgaccttgaacttgtgagcctctgagtgactgag 439

             
Query: 235 gt 236
           ||
Sbjct: 440 gt 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 641
Length adjustment: 9
Effective length of query: 227
Effective length of database: 632
Effective search space:   143464
Effective search space used:   143464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)