BAC Information

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BAC

Clone NameMSMg01-134C07
Chromosome1 (Build37)
Map Location 67,620,491 - 67,621,221
singlet/doubletsinglet
Overlap genenone
Upstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134C07.T7 (MSMg01no134_c07.b1)MSMg01-134C07.TJ (MSMg01no134_c07.g1)
ACCAG340929AG340930
length1,1671,208
length of high quality
(start - end)
690 (87 - 776)733 (128 - 860)
definitionCHROMAT_FILE: MSMg01no134_c07.b1 PHD_FILE: MSMg01no134_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:15 2005CHROMAT_FILE: MSMg01no134_c07.g1 PHD_FILE: MSMg01no134_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTTCTNTTNNTNACAGTGGGCGCTAAGACTCCTATAGGGAGAGGATC
CGCGGAATTCCTGATCTTTCCAGACTTTTTTCATGAATGGATGTTGGATT
TTGTCAAATGCTTTCTCATCATCTAACGAGATGATCATGTGGTTTTTGTC
TTTGAGTTTGTTTATATACTGGATTACATTGATGGATTTCAGTATATTGA
ACCATCCCTGCATCCCTGGGATGAAACCTACTTGGTCAGGCTGGATGATT
ATTTTGATGTGTTCTTGGATTCGGTTAGCAAGAACTTTATTGAGGATTTT
TGCATCGATATTCATAAGGGAAATTGGTCTGAAGTTCTCTATCTTTGTTG
GGTCTTTTTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAG
TTGTTTAGAGTACCTTCTACTTCTATCTTGTGGAATAGTTTGTGAAGAAC
TGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGT
CAGGTCCTGTGCTTTTTTTGGCTGGGAGACTATTAATAACTGCTTCTATT
TCTTTAGGGGATATGGGACTGTTTAGATGGTCAAGTTGATCCTGATTCAA
CTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTT
CCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGG
ATTTCTTCAGGATCTGTTGTTATGTCTCCCTTTTCATTTCTGATTTTGTT
AATTAGGATGCTTTCCCTGTGCCCTCTAGTGAGTCTGGCTAAAGNTTTAT
CTATCTTGTTGATTTTCTCAAAAAACAGCTCCCTGATTGGTTGCTTCTTT
GAAAAAATCTTCTTGTTTCCCCCCGGGGTGAATTCCCCCCCGCAATTGAT
TATTTTCTGCCCGGCTACTCCTCTTTGGGGGAATATTTTTTTCCTTTTTT
CTATACACTTTATATTTGTGTGTCCCACTTCTTTTAAGGTGGGGTTCTCC
TCCTTTCTTTTTTTTTGGCCACCCTTACCTATAAATATTTCTTCTCATAT
TAGAATTTTTTGTGTTTCCTAACAATACTTACGCTATTGTTTTTTCTTTT
TTTCTTAATACTAAATATGCTACATATAGTTTTTTTTTTTTCATCTTTTT
TCTATATCTTCTAAAAA
NCCCTTTCTTTTNNNTAACATTGGATGCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAATGAATGTGTCCTA
ATAGAGGAACGTGGATAGATAACTACTGCCTCTGGTTTGAAGTAACCACA
AAATTTGAAAGTTTGTGATGTAAAGCATTCTAATGACATATTCATTGTGA
GTTTTGAAGGAGTAATTGGCACATTTTTCTTTTTCTGTTTATCAGTTTTT
ATTACAGGTAAGTATTTTAATTGGAGACTTTAGTTTACAAAAGTGTAGAA
CAGAATAATAATCAGAACACCCAAGAGTTCCTGTAATTGAAGAACAATTC
ATAGAAATGAGGTATACAAATCCCCAAATCCATAAGTAAGCAAATAAGTA
AACTTTATTGCGTATTCAAAATGTCTAACAGGTGTGGGACAGAGTACAGT
TGTACACTTGCTTGTGCAGCACTGAGGTCAATCCTTAACACACATGTGTG
AGTAAAGCTCCTCTACAGAAAGAGATTTAGTTGAGCAAAGGAGTATGTAA
CCACTAGAAAGATAATAAAAAATATGACTTTAAGAAATATGAAATATGTG
TTCATATTCTTCTTTCCCTCTGACTCCCTTCTTTCTCTTCTATCACTCTA
TCACTAGAGAAAATGAAAAATATTCACTAGCTCTCAGATGTTATGTGAAC
AAAAATGTAGCCAACACCAGAGGAAAACTCTACAGTGAAATTCCATGCTA
TAATAACTGATGGTTATATGAATATCATTGAAGGCCATAACTGACCCAGA
TTGTATCCCAATTAGGTGCACAACCTTCTGTATAATTTTAGAAATTTACC
ATGCTGTANGAAATTGTCTAGTAGGGGATAAAGAAAGCAATCACTATTAA
CAGGAACAATACAGGGGAATCTTTCCTGNTGTAGTTATTAAGCACTGTAG
CTGTTAAAAATGGAGGCCTACTCTACTAATGAACAGGTTAAATTTAAAAA
AAACTCTTTGGAAAAAAAGAACCTAAAATCTTTGAGGTAAAAATATTTAT
GTCTGACAGTTGGGCAAAGACCTGTGGTTGGAACCTTCCTTAATGGGAAC
CCCCNTTTTTGTTGGTTGGGTGGTTTTTTGTTTAAACGGGCCCCCTTATT
CCTTTTAAAAGAGAGCTCAAAACTTTGTTTATCCCAAAAAATAAGGTTAA
TTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_c07.g1 MSMg01no134_c07.g1 CHROMAT_FILE:
MSMg01no134_c07.g1 PHD_FILE: MSMg01no134_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:16 2005
         (733 letters)



>mm_chr1_67620291_67621423
          Length = 1133

 Score = 1413 bits (731), Expect = 0.0
 Identities = 731/731 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctctggtttgaagtaaccacaaaatttgaaagtttgtgatgtaaagcattctaatgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcctctggtttgaagtaaccacaaaatttgaaagtttgtgatgtaaagcattctaatgac 260

                                                                       
Query: 61  atattcattgtgagttttgaaggagtaattggcacatttttctttttctgtttatcagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atattcattgtgagttttgaaggagtaattggcacatttttctttttctgtttatcagtt 320

                                                                       
Query: 121 tttattacaggtaagtattttaattggagactttagtttacaaaagtgtagaacagaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttattacaggtaagtattttaattggagactttagtttacaaaagtgtagaacagaata 380

                                                                       
Query: 181 ataatcagaacacccaagagttcctgtaattgaagaacaattcatagaaatgaggtatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataatcagaacacccaagagttcctgtaattgaagaacaattcatagaaatgaggtatac 440

                                                                       
Query: 241 aaatccccaaatccataagtaagcaaataagtaaactttattgcgtattcaaaatgtcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatccccaaatccataagtaagcaaataagtaaactttattgcgtattcaaaatgtcta 500

                                                                       
Query: 301 acaggtgtgggacagagtacagttgtacacttgcttgtgcagcactgaggtcaatcctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaggtgtgggacagagtacagttgtacacttgcttgtgcagcactgaggtcaatcctta 560

                                                                       
Query: 361 acacacatgtgtgagtaaagctcctctacagaaagagatttagttgagcaaaggagtatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacacatgtgtgagtaaagctcctctacagaaagagatttagttgagcaaaggagtatg 620

                                                                       
Query: 421 taaccactagaaagataataaaaaatatgactttaagaaatatgaaatatgtgttcatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaccactagaaagataataaaaaatatgactttaagaaatatgaaatatgtgttcatat 680

                                                                       
Query: 481 tcttctttccctctgactcccttctttctcttctatcactctatcactagagaaaatgaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcttctttccctctgactcccttctttctcttctatcactctatcactagagaaaatgaa 740

                                                                       
Query: 541 aaatattcactagctctcagatgttatgtgaacaaaaatgtagccaacaccagaggaaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaatattcactagctctcagatgttatgtgaacaaaaatgtagccaacaccagaggaaaa 800

                                                                       
Query: 601 ctctacagtgaaattccatgctataataactgatggttatatgaatatcattgaaggcca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctctacagtgaaattccatgctataataactgatggttatatgaatatcattgaaggcca 860

                                                                       
Query: 661 taactgacccagattgtatcccaattaggtgcacaaccttctgtataattttagaaattt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 taactgacccagattgtatcccaattaggtgcacaaccttctgtataattttagaaattt 920

                      
Query: 721 accatgctgta 731
           |||||||||||
Sbjct: 921 accatgctgta 931


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 733
Length of database: 1133
Length adjustment: 10
Effective length of query: 723
Effective length of database: 1123
Effective search space:   811929
Effective search space used:   811929
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)