Query= MSMg01no134_f15.b1 MSMg01no134_f15.b1 CHROMAT_FILE:
MSMg01no134_f15.b1 PHD_FILE: MSMg01no134_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:40 2005
(808 letters)
>mm_chr1_167961748_167962956
Length = 1209
Score = 1338 bits (692), Expect = 0.0
Identities = 772/808 (95%), Gaps = 17/808 (2%)
Strand = Plus / Minus
Query: 18 gaattctttactgttctctttcttctttgctgtgccaccttttcctctgtctgtcttcac 77
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 976 gaattctttactgttctctttcttctttgctgtgccacctcttcctctgtctgtcttcac 917
Query: 78 cctgttcatttactctcctacactatttccatcctctttacccaggagcttccccttgcc 137
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 916 cctggtcatttactctcctacactctttccatcctctttacccaggagcttccccttgcc 857
Query: 138 acttctgggtcatctctgcacatccctccatctgcagtctgtgtgaagaggcttctcttc 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 acttctgggtcatctctgcacatccctccatctgcagtctgtgtgaagaggcttctcttc 797
Query: 198 cacactccctggctgctcactccgtactgcacacacacatctg----cacacat------ 247
||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 796 cacactccctggctgctcactccatactgcacacacacatctgcacacacacatctgtat 737
Query: 248 -----acatctgcattacacacatctgcattacacacatctgctcattcctgtcttgcaa 302
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 736 tacacacatctgcattacacacatctgcattacacacatctgctcattcctgtcctgcaa 677
Query: 303 ggccagactaagcaaggatttgtttacatcacttagcaaaaactaaacagagacacacgg 362
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 676 ggccagactaagcaaggatttgtttacatcacttatcaaaaactaaacagagacacacgg 617
Query: 363 agtttacataactttactgtagccacacaagcattaatgaagaaagagagtgatttaaaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agtttacataactttactgtagccacacaagcattaatgaagaaagagagtgatttaaaa 557
Query: 423 tcaaatttaggtgacttcaaacaagctccaactgctacccctggcctagactgggtggtg 482
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 556 ccaaatttaggtgacttcaaacaagctccaactgctacccctggccaagactgggtggtg 497
Query: 483 acctggcattagcctctgcctgagacaacacgtgaggtgaaaggcaacagataacagttt 542
||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| |||||
Sbjct: 496 acctggcgttagcctctgcccgaggcaacacgtgaggtgaaaggcaacagataatagttt 437
Query: 543 caggacactagaggtaatggttaatcttcagtcactttaactggaattaaaatcagtaga 602
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 436 caggacactagagttaatggttaatcttcagtcactttaactggaattaaaatcaataga 377
Query: 603 aaaacgcctctgaatatgtctaatgatgtttctacaaagattgcactgagtgggaagacc 662
|||| |||||||||||||||||| | ||||||||||| ||||||||||||||||||||||
Sbjct: 376 aaaatgcctctgaatatgtctaaaggtgtttctacaacgattgcactgagtgggaagacc 317
Query: 663 cagcctagatgtgggtagctggggtcccagactgaatgaaaaggagaagtgagcagaact 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cagcctagatgtgggtagctggggtcccagactgaatgaaaaggagaagtgagcagaact 257
Query: 723 agtactcacctctctctgcttcctgactgcagatgcagacagtgagacctgtcacctcac 782
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 256 agtactcacctctctctgcttcctgactgcagatgcagacaatgagacctgtcacctcac 197
Query: 783 atgcctgctgccgtgcct--ccctgctc 808
|||||||||||||||||| ||||||||
Sbjct: 196 atgcctgctgccgtgcctccccctgctc 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 808
Length of database: 1209
Length adjustment: 10
Effective length of query: 798
Effective length of database: 1199
Effective search space: 956802
Effective search space used: 956802
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no134_f15.g1 MSMg01no134_f15.g1 CHROMAT_FILE:
MSMg01no134_f15.g1 PHD_FILE: MSMg01no134_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:40 2005
(702 letters)
>mm_chr1_167856739_167857839
Length = 1101
Score = 1330 bits (688), Expect = 0.0
Identities = 695/698 (99%), Gaps = 3/698 (0%)
Strand = Plus / Plus
Query: 6 tcatgaatcacatacttcttaaggaatagtctcaatgcctt-actgcttattttttatat 64
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 206 tcatgaatcacatacttcttaaggaatagtctcaatg--ttgactgcttattttttatat 263
Query: 65 gtatttttctgtaaaatgaatttgatatcaaaatcattatcttactgcactgcagtgagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtatttttctgtaaaatgaatttgatatcaaaatcattatcttactgcactgcagtgagt 323
Query: 125 cctctgggtgcagtaggcacctggagtactggagaccacaaatgcagttctcctgtcttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctctgggtgcagtaggcacctggagtactggagaccacaaatgcagttctcctgtcttc 383
Query: 185 ttctcaactttcttacaaagctaaccatctgttctgtgtactgctgccatcatgtgtgtg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttctcaactttcttacaaagctaaccatctgttctgtgtactgctgccatcatgtgtgtg 443
Query: 245 gtgtgtatgcatgtttctatatgtgcatagttcactgcacatgagattgatgttaggaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgtgtatgcatgtttctatatgtgcatagttcactgcacatgagattgatgttaggaat 503
Query: 305 catacttgatcacttcctccatattcactgagtagtcttgctagccagcttgcttagaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catacttgatcacttcctccatattcactgagtagtcttgctagccagcttgcttagaga 563
Query: 365 aagctctaccactgcttttcaaggctggacttacaggcaagccacaacaaccatcaacat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagctctaccactgcttttcaaggctggacttacaggcaagccacaacaaccatcaacat 623
Query: 425 tcatgtggcttcttgaaatgagaactctggtttctcccccaacccacttgttttaatttg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcatgtggcttcttgaaatgagaactctggtttctcccccaacccacttgttttaatttg 683
Query: 485 tacactttctccctcaatggtggttcattttaccttgcctataagtgtatttaaaaattc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tacactttctccctcaatggtggttcattttaccttgcctataagtgtatttaaaaattc 743
Query: 545 attaaaagaaataatcaacagaacaaactgacaccctacatacagaatggcagaacatct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 attaaaagaaataatcaacagaacaaactgacaccctacatacagaatggcagaacatct 803
Query: 605 ttatatcacacttcagacagagggctaatgttcagaatttacaaagagctgcagaagtca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttatatcacacttcagacagagggctaatgttcagaatttacaaagagctgcagaagtca 863
Query: 665 aataccaaggaaataaaactgccaattaacaaatgggc 702
||||||||||||||||||||||||||||||||||||||
Sbjct: 864 aataccaaggaaataaaactgccaattaacaaatgggc 901
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1101
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1091
Effective search space: 754972
Effective search space used: 754972
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
