BAC Information

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BAC

Clone NameMSMg01-134O24
Chromosome1 (Build37)
Map Location 87,501,904 - 87,502,630
singlet/doubletsinglet
Overlap geneSp140
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110
Downstream geneSp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134O24.T7 (MSMg01no134_o24.b1)MSMg01-134O24.TJ (MSMg01no134_o24.g1)
ACCAG341528AG341529
length1,1581,191
length of high quality
(start - end)		790 (83 - 872)---
definitionCHROMAT_FILE: MSMg01no134_o24.b1 PHD_FILE: MSMg01no134_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:52 2005CHROMAT_FILE: MSMg01no134_o24.g1 PHD_FILE: MSMg01no134_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:52 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCCCTTTTTTTNNTAACAGTGGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCATAGCTTGTGTCTGTCTTATCTTCGCTAGCCTGAGTAGAGA
TTTAATAATGTATTGATCTTTCCAAAGGATGTGAGCATAATGCCCACTTC
TTTTAATTGTATGGATTTCTACTTTAATTTCATTGAATCTTTGTCTTCAT
TGGGATGAAATCATTCCTCATAAGATTGTTCATTTATGCCTCTCTTAGCT
TCTGACACATACAAAGCTGTATGTTTCCCATTAGCCACTGACTTTGCTGT
GTCTCAGATTTAATAATTTTTAGACTTCAGTGCTTTTTTAGTGTAGGAGA
AAGGGTCACACTTTTGCTTGTCTTACCCCATTTAAAAAAAATTACATTCA
TTTATTTATTGTATGTGTGCAGGTGCCACAATGTGTTTTTTGAGATCAGA
GGACAACTTTGGGGAGTTGGTTCTCTCCTACTACCGCGTAGTTAGTTCTT
AGGGGAGCAAGCTCATGTCCGCAGACTTGGTGGCAAGGCCTGTATCAGCT
GAGCCATTTTCCCAGACCCTCTTTTATTTACATTAGTTACAGTTTTTAAA
CGTACTCTGTTTTATAATTGTGCTATTATTAAATTATCCACATTTTGACT
CTTTATGGACACAGAGAAATACCTACCATGTTTGTAAATATTTTCATTTT
ACTCTTTTTTTTTTTGGCTTTCCTTTCTTTTTATGCCCTTTTGGTTTTAG
TAAAACATTTTATGATTCTTTCTTCCTTCCTTTCTTTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTTTCTTTCTTCC
TTTCTTTCTTGAATTCCTTTACCTATTTTTTTGNTGTCTCATTTTGNTTT
TTCTTTTTTGCAGTACTGGGGATCAATTTTGGTGGATTCTCTTGAAAATG
AATTTTTGAGAAAATTTTCAAATCTTGGCCTCTGGTTTTTTCAAAAAAAG
GGTTGAAAAAATTTCCCTCCCTTATAACATTTTGGGCTATTTTATATTAA
AATTGAATACCCCGCCACCTCTTTTTTTTTTTATAAAAAATATTTTTCGT
TTTTCTATTTGTTATTGACTCTCCCCTTCTTTCCTTTCTTTCATTTTCTT
TTTTTTTT

NCCTTTCTTTTTNATACCATGTGAGCTGGCGTCGACTTACGTGACATTTA
GAAGAACTCGTGAAGGATCCACGTCCCTGATATTTCTCTGCTATAATAAT
GATAATAATAATAATCCTTATATTATCACTCTTGTATATTTCGGCACTAT
GTTGCCACTATGCCTCTTGCATGCCACTTGTAAAAGCTATTTATGAGCTG
GACATGATGGCCCCAGAGTGTCCCGAGTGTCCCCGGAATGGACCCGGAAG
AAATGAGCAGTTGTTGAGCGACTCGCAAGAGAAACTCCTCTTTACATCCC
CTTTATCACTCTAAAAAGACACTGCCAATTTTATGGCTGATTTACTGCCC
ATGACCTTCCCGAGCCTGGAGGTAGCGTGACACAAGTGTTACTCCAGACA
TAGGTTCGCTCCATGGGTTCTGCTTGGCTTTTGCTTCGTTTTGGCTACAT
TTGGAATACTGCTGCTATTACGCAACTATCTGTGAAATAACTGTGGCTTG
ACCTCGGCTTGACATCCTGATGGGATCCTGACGCGCTTGTTTCACCCTTG
CATAATCGATGCTCACTACATCCTCACTACAGCCTCGATATGCCCACAAA
ATCCCCAAAAAACCCAAGAGCTTCCCACCATCTTCCGACCCTATAGGATA
ACTACTGTCTGGTCTCACTCTGATCAGACGCGGATGTAAACATTCGACTT
CCCTTTCTCGTCACATCCTTGCCACATTATGACCGGCATGTGACGGCCAT
CACAGGACCGTCACTCGAATGACCCTCTAACCACCCTCTAACCGGCCTCA
CATTGTGCTCTCATTATGTTCACATTTTATCTATCGGAGCCCGATCTGAG
CCAGAATGTTTCAATTTCAAATATTTGAAGACCGATCCATGCCTGTTTCC
TGGGGGACTTTGGTATAACATAGTCTTCAACAAATATCTCCCAAAAAATG
GCCCAAGAAATTAGGCCCCCAATAATAACGCTCCCTTTTGTTGCGAAATT
CTTCTCTAAAAAGACCCCTTTTTAAATAAACCCTTTGCCTCGAACAATAT
TGCCATGGCCCCCTTCTTTTTTCTCCCTTTTTTATAAAAGTTTTTTATAA
ACCGCTCCTGTCTCTTCTTTCACCCCTCTCTCTCCACCACATCTTTAAAC
CTCTCCCTTTTTTTTCTTATTCCTNTCCTTTTTCCTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_o24.b1 MSMg01no134_o24.b1 CHROMAT_FILE:
MSMg01no134_o24.b1 PHD_FILE: MSMg01no134_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:52 2005
         (790 letters)



>mm_chr1_87501704_87502892
          Length = 1189

 Score = 1286 bits (665), Expect = 0.0
 Identities = 713/729 (97%), Gaps = 2/729 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgctagcctgagtagagatttaataatgtattgatctttccaaaggatgtgagcataatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgctagcctgagtagagatttaataatgtattgatctttccaaaggatgtgagcataatg 260

                                                                       
Query: 61  cccacttcttttaattgtatggatttctactttaatttcattgaatctttgtcttcattg 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccacttcttttaattctatggatttctactttaatttcattgaatctttgtcttcattg 320

                                                                       
Query: 121 ggatgaaatcattcctcataagattgttcatttatgcctctcttagcttctgacacatac 180
           ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ggatgaaatcactcctcataagattgttcatttatgcctctcttagcttccgacacatac 380

                                                                       
Query: 181 aaagctgtatgtttcccattagccactgactttgctgtgtctcagatttaataattttta 240
           ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 aaagctgtatgtttccccttagccactgcctttgctgtgtctcagatttaataattttta 440

                                                                       
Query: 241 gacttcagtgcttttttagtgtaggagaaagggtcacacttttgcttgtcttaccccatt 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 gacttcagtgcttttttagtgtaggagaaagggtcacccttttgcttgtcttaccccatt 500

                                                                       
Query: 301 taaaaaaaattacattcatttatttattgtatgtgtgcaggtgccacaatgtgttttttg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 taaaaaaaattacattcatttatttattgtatgtgtgcaggtgccacaatgtgtcttttg 560

                                                                       
Query: 361 agatcagaggacaactttggggagttggttctctcctactaccgcgtagttagttcttag 420
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 561 agatcagaggacaactttggggagttggttctctcctactaccatgtagttagttcttag 620

                                                                       
Query: 421 gggagcaagctcatgtccgcagacttggtggcaaggcctgtatcagctgagccattttcc 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 621 gggagcaagctcatgtccgcagacttggtggcaaggcctgtatcagctgagccatcctcc 680

                                                                       
Query: 481 cagaccctcttttatttacattagttacagtttttaaacgtactctgttttataattgtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagaccctcttttatttacattagttacagtttttaaacgtactctgttttataattgtg 740

                                                                       
Query: 541 ctattattaaattatccacattttgactctttatggacacagagaaatacctaccatgtt 600
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 ctattattaaattatccacattttgactcattatggacacagagaaatacctaccatgtt 800

                                                                       
Query: 601 tgtaaatattttcattttactctttttttttttggctttcctttctttttatgccctttt 660
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 801 tgtaaatattttcattttactctttttttttt-ggctttcctttctttttatgccctttt 859

                                                                       
Query: 661 ggttttagtaaaacattttatgattctttcttccttcctttctttctctctctctctctc 720
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 860 ggttttagtaaaacattttatgattctttcttcctttctttctttctctctctctctctt 919

                    
Query: 721 tctctctct 729
           ||| |||||
Sbjct: 920 tct-tctct 927


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 790
Length of database: 1189
Length adjustment: 10
Effective length of query: 780
Effective length of database: 1179
Effective search space:   919620
Effective search space used:   919620
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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