Query= MSMg01no135_a05.b1 MSMg01no135_a05.b1 CHROMAT_FILE:
MSMg01no135_a05.b1 PHD_FILE: MSMg01no135_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:01 2005
(294 letters)
>mm_chr1_106516203_106516892
Length = 690
Score = 534 bits (276), Expect = e-156
Identities = 288/292 (98%), Gaps = 4/292 (1%)
Strand = Plus / Plus
Query: 1 atcatttccttcagtcctgtgacttttccaggtgagtctatctgaagtagcattccagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcatttccttcagtcctgtgacttttccaggtgagtctatctgaagtagcattccagcc 260
Query: 61 aggaaatggagggttttcccttgaagctttcggcacatagtttaagttaacgagacatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaaatggagggttttcccttgaagctttcggcacatagtttaagttaacgagacatgg 320
Query: 121 caatagcaggtgggtaattcaatgtttcacacactataatgggccaaaggctaattacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatagcaggtgggtaattcaatgtttcacacactataatgggccaaaggctaattacta 380
Query: 181 ttcactgcaaaaatgaatataaaagtaccaattatgctttcatcctagtagatgtgatgt 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcactgcaaaa-tgaatataaaagtaccaattatgctttcatcctagtagatgtgatgt 439
Query: 241 attaaaagctatcagctttccncttctgtaataacnagcttttggtctgttt 292
||||||||||||||||||||| ||||||||||||| |||||||| |||||||
Sbjct: 440 attaaaagctatcagctttcc-cttctgtaataac-agcttttg-tctgttt 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 690
Length adjustment: 9
Effective length of query: 285
Effective length of database: 681
Effective search space: 194085
Effective search space used: 194085
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no135_a05.g1 MSMg01no135_a05.g1 CHROMAT_FILE:
MSMg01no135_a05.g1 PHD_FILE: MSMg01no135_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:01 2005
(628 letters)
>mm_chr1_106663353_106664374
Length = 1022
Score = 1172 bits (606), Expect = 0.0
Identities = 620/628 (98%), Gaps = 6/628 (0%)
Strand = Plus / Minus
Query: 1 caggccaataagagatcctgcttcaagtcaatcaaccaatcaaacagtacctgagggatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 caggccaataagagatcctgcttcaagtcaatcaaccaatcaaacagtacctgagggatt 763
Query: 61 tggtttaggcatgatcaatctagaaggcacttcctgtttcacagttctgacctttcttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tggtttaggcatgatcaatctagaaggcacttcctgtttcacagttctgacctttcttcc 703
Query: 121 tggggtcacgtagaaagcatgtttagaaaggaccactctcatttccattcctaccccgag 180
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 702 tgaggtcacgtagaaagcatgtttagaaaggaccac------ttccattcctaccccgag 649
Query: 181 tgggaggttactgaagcaggaagggttactaattgcagctttggtacagctgaccagcag 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tgggaggttactgaggcaggaagggttactaattgcagctttggtacagctgaccagcag 589
Query: 241 ctaagattctacttgattctgcctgtctacttccctacagtactccggtgagagcttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ctaagattctacttgattctgcctgtctacttccctacagtactccggtgagagcttttt 529
Query: 301 gggtttcttcccatcattgagctcccaaataaagaacttagtctgcttggattagtacgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gggtttcttcccatcattgagctcccaaataaagaacttagtctgcttggattagtacgt 469
Query: 361 tattcaaagattgatcatgcaaatgctctgtggccaaatgatctatataaacaaccaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tattcaaagattgatcatgcaaatgctctgtggccaaatgatctatataaacaaccaata 409
Query: 421 aaactgtgtacttaagtaaccactacaattctcaagggcaggacgatattaaatgttcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aaactgtgtacttaagtaaccactacaattctcaagggcaggacgatattaaatgttcta 349
Query: 481 gttaaggcaactgggccatttctgagatttcaggatgcctagaagcaggactcagagttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gttaaggcaactgggccatttctgagatttcaggatgcctagaagcaggactcagagttg 289
Query: 541 taacaatataattatcaatactgagcagctaatgtttattgagaagtagtgtgacagatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 taacaatataattatcaatactgagcagctaatgtttattgagaagtagtgtgacagatt 229
Query: 601 tgttaaacttaagtcatctcatccaatc 628
||||||||||||||||||||||||||||
Sbjct: 228 tgttaaacttaagtcatctcatccaatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1022
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1012
Effective search space: 625416
Effective search space used: 625416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
