Query= MSMg01no135_a09.b1 MSMg01no135_a09.b1 CHROMAT_FILE:
MSMg01no135_a09.b1 PHD_FILE: MSMg01no135_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:02 2005
(593 letters)
>mm_chr1_77648132_77649124
Length = 993
Score = 1091 bits (564), Expect = 0.0
Identities = 582/588 (98%), Gaps = 2/588 (0%)
Strand = Plus / Plus
Query: 7 ggaattctcttgttcctgacaaaatcttttcacttctcaagattcagacctaatggctgc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattctcttgttcctgacaaaatcttttcacttctcaagattcagacctaatggctgc 266
Query: 67 cactcaagtaaacgtccctagttcatccatccaaccacacagcacgtggaatattcaaag 126
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cactcaagtaaacatccctagttcatccatccaaccacacagcacgtggaatattcaaag 326
Query: 127 tgtgttgtctgttttactgtgtgtctctgtgttgtgcaatggctgttttattatctgtct 186
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 327 tgtgttgtctgttttactgtgtgtctctgtgttgggcaatggctgttttattatctgtct 386
Query: 187 cagtagactttatttcactggaggaaggcccatgtcccatttatcacccataccatgtgt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cagtagactttatttcactggaggaaggcccatgtcccatttatcacccataccatgtgt 446
Query: 247 cttaaggcctctggcatggttcttagtt-gttctttctgaaggtttggggcatgaatgat 305
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 447 cttaaggcctctggcatggttcttagttaga-ctttctgaaggtttggggcatgaatgat 505
Query: 306 ttaagtgaggaggcatattaaaaggggcgtttctgaaaaggcattcatccttggtctttc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttaagtgaggaggcatattaaaaggggcgtttctgaaaaggcattcatccttggtctttc 565
Query: 366 actacagctacaggatgaatgtccttcttgtgataccatttcttataactgtcaatgttt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 actacagctacaggatgaatgtccttcttgtgataccatttcttataactgtcaatgttt 625
Query: 426 gcatcattgaattaatgacctattttctgatttgtcatcacttttctcctcttatggcca 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gcatcattgaattaatgacctattttctgatttgtcatcacttttctcctcttatggcca 685
Query: 486 agttttcattatgatgagactatttcccctcatagccaaatgctccatttactagagtta 545
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 686 agttttcattatgatgagactatttcccctcagagccaaatgctccatttactagagtta 745
Query: 546 cattttatgtaaatattatgatttccaacctgtgtcttactttatcaa 593
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cattttatgtaaatattatgatttccaacctgtgtcttactttatcaa 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_a09.g1 MSMg01no135_a09.g1 CHROMAT_FILE:
MSMg01no135_a09.g1 PHD_FILE: MSMg01no135_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:02 2005
(558 letters)
>mm_chr1_77817003_77817960
Length = 958
Score = 1031 bits (533), Expect = 0.0
Identities = 551/557 (98%)
Strand = Plus / Minus
Query: 2 gaattcattctttggtctatgcttctgctggctatttccttctggtcattccttcttatc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaattcattctttggtctatgcttctgctggctatttccttctggtcattccttcttatc 621
Query: 62 ttctgtctatataaaaatcatggctgacatcctgtggggtctgagctctgatgccaggaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttctgtctatataaaaatcatggctgacatcctgtggggtctgagctctgatgccaggaa 561
Query: 122 aggaggagtgtcacggaaggttgggtgaccaaagagaatgagaagagtcacaaggaggtg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aggaggagtgtcacggaaggttgggtgaccaaagagaatgagaagagtcacaaggaggtg 501
Query: 182 agacaaactttgtttaaagatagacaggatgctaggcaagcacccaggcatatgccaaca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agacaaactttgtttaaagatagacaggatgctaggcaagcacccaggcatatgccaaca 441
Query: 242 tacatagaccacttactggtggacagataaacatgtgtagactggcacacaggctgcttg 301
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tacatagaccacatacaggtggacagataaacatgtgtagactggcacacaggctgcttg 381
Query: 302 gaggtatgcacaaatgcagggagagagacacacataggcaagctggcaaggtgaaggctc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaggtatgcacaaatgcagggagagagacacacataggcaagctggcaaggtgaaggctc 321
Query: 362 aggcctctgatttaaaggccatatttgtagaggatggtcaaaaaaagaagcattttgcta 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aggcctctgatttaaaggccatatttgtagaggatggtcaaaaaaagaagcattttgcta 261
Query: 422 aaaaaagagtctttttttttaaaagaacttgattttaattaaaagctttctacaaagaga 481
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaaaaaaagtcttttttttaaaaagaacttgattttaattaaaagctttctacaaagaga 201
Query: 482 aaaaataagatggttagcaactgaggaagacacttaatgttgacttttggcctccacctg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aaaaataagatggttagcaactgaggaagacacttaatgttgacttttggcctccacctg 141
Query: 542 aacacatatttatacac 558
||||| |||| ||||||
Sbjct: 140 aacacgtattcatacac 124
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
