Query= MSMg01no135_f10.b1 MSMg01no135_f10.b1 CHROMAT_FILE:
MSMg01no135_f10.b1 PHD_FILE: MSMg01no135_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:27 2005
(664 letters)
>mm_chr1_159847874_159848937
Length = 1064
Score = 1168 bits (604), Expect = 0.0
Identities = 646/660 (97%)
Strand = Plus / Plus
Query: 5 gaattcatgaaatgtgctttgatcatatgcgttcctgttatcactctccccaagcccctt 64
|||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgaaatgcgttttgatcatatacgttcctgttatcactctccccaagcccctt 264
Query: 65 cgttctcacagcttcttgtctttcctgtcctttctcttttgtgacctgttgagcttaatt 124
| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 265 cattctcacagcttcttgtctttcctggcttttctcttttgtgacctgttgagcttaatt 324
Query: 125 agagttgttttcatgagcataagttgggagttatttactggcgcgtgagcagctaaccaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agagttgttttcatgagcataagttgggagttatttactggcgcgtgagcagctaaccaa 384
Query: 185 tggctacatctctgaaaaagaaaaagaccctttcttaccctgtgcccattaagtgccaag 244
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 tggctacatctctgaaaaagaaaaagaccctttcttaccctgtacccattaagtgccaag 444
Query: 245 ggctcctctgggaaggctgaaggggccattcttctataggttttgttcaggtaaccacag 304
||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 445 ggctcttctgggaaggctgaaggggccagtcttctataggttttgttcaggtaactacag 504
Query: 305 gtactgggatttcatccccagggaggcagtactttacaacactcctccccttcctctgtt 364
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 gtactgggatttcatccgcagggagacagtactttacaacactcctccccttcctctgtt 564
Query: 365 ttttatgtactttctggccccctgtctatgatgttctctgagccttgggtagggtcacat 424
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 565 ttttatgtactttctggccccctgtctatgatgttctctgagccttgggtggggtcacat 624
Query: 425 agatgtctcattagtactgatcattgacagtcatttgttctcagccctttgcccaattac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agatgtctcattagtactgatcattgacagtcatttgttctcagccctttgcccaattac 684
Query: 485 aagtctctgccatacctgctgtccactgtaaaaggaagtttctttgatcaaagctgaaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aagtctctgccatacctgctgtccactgtaaaaggaagtttctttgatcaaagctgaaaa 744
Query: 545 cagaactaatctggggatagaaacataaatatttagatggtagtttaacaacaggcttgt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cagaactaatctggggatagaaacataaatatttagatggtagtttaacaacaggcttgt 804
Query: 605 tttgcaaatactacttcccactgtaaacagaagcttctccaactcagactattagcagca 664
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttttcaaatactacttcccactgtaaacagaagcttctccaactcagactattagcagca 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_f10.g1 MSMg01no135_f10.g1 CHROMAT_FILE:
MSMg01no135_f10.g1 PHD_FILE: MSMg01no135_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:27 2005
(647 letters)
>mm_chr1_159995281_159996329
Length = 1049
Score = 1042 bits (539), Expect = 0.0
Identities = 557/563 (98%), Gaps = 3/563 (0%)
Strand = Plus / Minus
Query: 87 gtactggtgagttggacacagggggatttcaagttcaaggatgtcctggtctccagacta 146
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 gtactggtgagatggacacagggggatttcaagttcaaggatgtcctggtctccagacta 990
Query: 147 aactcaagacaagtcacagcaactcagagagaccatgtttcaaaataaaaagt-aaaaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 989 aactcaagacaagtcacagcaactcagagagaccatgtttcaaaataaaaagtaaaaaat 930
Query: 206 aaggctagagagatggttcagtagtataggcttcctagcatgtgcaacgctctttgttca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 aaggctagagagatggttcagtagtataggcttcctagcatgtgcaacgctctttgttca 870
Query: 266 atgctcaatacttacaacaaactgatggatgctttaccctcctcatagatttgtagggcc 325
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 869 atgctcaatacttacaacaaactgatggatactttaccctcctcatagatttgtagggcc 810
Query: 326 ccattgttgattttattcagcctgcttacaggcacaacctctttcaactcttctccaaca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ccattgttgattttattcagcctgcttacaggcacaacctctttcaactcttctccaaca 750
Query: 386 tttattcactcataaacatttagttaataactaccatttgtctttctataaaagcaaggc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tttattcactcataaacatttagttaataactaccatttgtctttctataaaagcaaggc 690
Query: 446 catttaaataaatggaggcctgacattagaatttaatttgtggtt-aaaaaaaaaag-aa 503
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 689 catttaaataaatggaggcctgacattagaatttaatttgtggttaaaaaaaaaaagaaa 630
Query: 504 gaaagaaagcagggtatatagaaataacctaaagaaaaccacctcttgtactcactgtcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gaaagaaagcagggtatatagaaataacctaaagaaaaccacctcttgtactcactgtcc 570
Query: 564 tatggattcaatattagacttgggtacagactgtaagattactttaagagaagatgaaaa 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tatggattcaatattagacttgggtacagactgtaagattactttaagagaagatgaaaa 510
Query: 624 gcattcatagcttagggaactca 646
|||||||| ||||||||||||||
Sbjct: 509 gcattcattgcttagggaactca 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1049
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1039
Effective search space: 661843
Effective search space used: 661843
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
