Query= MSMg01no135_h20.b1 MSMg01no135_h20.b1 CHROMAT_FILE:
MSMg01no135_h20.b1 PHD_FILE: MSMg01no135_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:38 2005
(604 letters)
>mm_chr1_8772281_8773286
Length = 1006
Score = 1102 bits (570), Expect = 0.0
Identities = 597/606 (98%), Gaps = 2/606 (0%)
Strand = Plus / Minus
Query: 1 attgctcttagctcac-agtattatccatcagatttttctgt-aataattttgagaatta 58
|||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 806 attgctcttagctcacaagtattatccatcagatttttctgtaaatagttttgagaatta 747
Query: 59 taacttgtgaattgagcaatttttctttcttgctctttttatctgaagacgaagacaggt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 taacttgtgaattgagcaatttttctttcttgctctttttatctgaagacgaagacaggt 687
Query: 119 gtttgcttgctacaagatggtaatcaagaaccttttaaagtccggttacaccttgccaga 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gtttgcttgctacaagatggtaatcaagaaccttttaaagtccggttacaccttgccaga 627
Query: 179 gacctgttgatgctacaggagcaggatgtgctgtgtgtgtctggtgagcctttctattct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gacctgttgatgctacaggagcaggatgtgctgtgtgtgtctggtgagcctttctattct 567
Query: 239 ggtgtaagtagctcttctgttgacttttttgcttgtgcttttcgatgatgaaaatgcttg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggtgtaagtagctcttctgttgacttttttgcttgtgcttttcgatgatgaaaatgcttg 507
Query: 299 ttcatagaaaactctgaacatattttctcttattcttggaaccgacccaatgatcctgtg 358
|| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 506 tttatagaaaactctgaacatattttctcttattcttggaaccaagtcaatgatcctgtg 447
Query: 359 aatacttcttgttcacactgtccagtaagctatgcccttgtttgagaatactgatttatg 418
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 446 aatacttcttgttcacactgtccagtaagctatgcccttgtttgagaacactgatttatg 387
Query: 419 ccacaagacaacacagtatagagaattctcactttatctactgagtcctggctgttgtat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 386 ccacaagacaacacagtatagagaattctcactttatctactgagtcctggctgtcgtat 327
Query: 479 aacagtgagtgatagctgcattttcttatcatgaaagagtaaaggtcttattaagatagt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aacagtgagtgatagctgcattttcttatcatgaaagagtaaaggtcttattaagatagt 267
Query: 539 acactttcaggagtggtattgaaagtgatggtagaaattatctcccaatgtctttgaaga 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acactttcaggagtggtattgaaagtgatggtagaaattatctcccaatgtctttgaaga 207
Query: 599 aagaga 604
||||||
Sbjct: 206 aagaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1006
Length adjustment: 10
Effective length of query: 594
Effective length of database: 996
Effective search space: 591624
Effective search space used: 591624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_h20.g1 MSMg01no135_h20.g1 CHROMAT_FILE:
MSMg01no135_h20.g1 PHD_FILE: MSMg01no135_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:38 2005
(658 letters)
>mm_chr1_8584324_8585380
Length = 1057
Score = 1251 bits (647), Expect = 0.0
Identities = 653/655 (99%), Gaps = 1/655 (0%)
Strand = Plus / Plus
Query: 1 tcatgaggtctactaaagtcaattaaagacacatggctaaaggcagtcactacaaccaga 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tcatgaggtctactaaagtcaattaaagacacatggctaaaggcagacactacaaccaga 260
Query: 61 gaaggaaaggctttctctaaaacttttggttataaaggggtactggagtttaacaatgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaggaaaggctttctctaaaacttttggttataaaggggtactggagtttaacaatgac 320
Query: 121 aatatatcagttcccctggggttcctcttacccatcctttggagggcgtagaagatgtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatatatcagttcccctggggttcctcttacccatcctttggagggcgtagaagatgtct 380
Query: 181 ctcatactggaatgtcacaaactacataaataacatctctgagcttaatggcagaaggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcatactggaatgtcacaaactacataaataacatctctgagcttaatggcagaaggag 440
Query: 241 atattaaccaaaaatagacaagagcctatgtgaccaagtgagtagctgtgatctgtgtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atattaaccaaaaatagacaagagcctatgtgaccaagtgagtagctgtgatctgtgtgt 500
Query: 301 gtgtgtgagctgatcagagacttcattggaagcacacaggaagccttcttttcagaaagg 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 gtgtgtgagctgatcagagacttcattggaagcacacaggaagc-ttcttttcagaaagg 559
Query: 361 tttctcgggccctgagtcatctacctcaaaaaaaccataagacaaattatcaaaccaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttctcgggccctgagtcatctacctcaaaaaaaccataagacaaattatcaaaccaaag 619
Query: 421 gactcaagaaacaaactaaatagatggtaaaaacggcatatagcttttattttaaaatct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gactcaagaaacaaactaaatagatggtaaaaacggcatatagcttttattttaaaatct 679
Query: 481 atggaaagaagaaatcaacaaagccccaaatctggtatcaagaaaattcattccacatcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atggaaagaagaaatcaacaaagccccaaatctggtatcaagaaaattcattccacatcc 739
Query: 541 tgagcaatattgagtttgataaaaagataaaaagtaaactcatatacttatttccaaaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgagcaatattgagtttgataaaaagataaaaagtaaactcatatacttatttccaaaac 799
Query: 601 taataatgtggtaatggtagatgataagctacaattacagatctgaggttttact 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 taataatgtggtaatggtagatgataagctacaattacagatctgaggttttact 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1057
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1047
Effective search space: 678456
Effective search space used: 678456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
