Query= MSMg01no135_n20.b1 MSMg01no135_n20.b1 CHROMAT_FILE:
MSMg01no135_n20.b1 PHD_FILE: MSMg01no135_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:05 2005
(672 letters)
>mm_chr1_64536719_64537788
Length = 1070
Score = 1056 bits (546), Expect = 0.0
Identities = 640/678 (94%), Gaps = 18/678 (2%)
Strand = Plus / Minus
Query: 3 gaattcccaaggcgttctcaagccttagcctagcagtcactctgagacccttcttccaga 62
|||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||||||
Sbjct: 870 gaattcccaaggcgttctgaggccttagcctaacagtcactctgaggcccttcttccaga 811
Query: 63 ttctactgtccaaagcaaatcaaaacagcatcccagataaaggcaggagggaggtcacat 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 810 ttctactgtccaaagcaaatcaaaacagcatcccagataaaggcaggagggaggccacat 751
Query: 123 cacctacct--gtaggaagagtaaaaaagccacatgccttgcaccttgcaagccattgta 180
|||||| | ||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 750 caccta--ttggtaggaagagtaacaaagccacatgccttgcaccttgcaagccgttgta 693
Query: 181 ggtatctctgcagctgtctccccagcagtccaccagtcaggggtgggaactgcaaaatat 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 692 ggtatctctgcagctgtctccc---cagtccaccagtcaggggtgggaactgcaaaatat 636
Query: 241 ggtctggacacagcatactt-ctcagtgagcttgacctctaccgtgaccagagcagggtc 299
||||||||||||||||| || ||||| |||||||||||| ||||||||||||||||||||
Sbjct: 635 ggtctggacacagcata-ttcctcagggagcttgacctccaccgtgaccagagcagggtc 577
Query: 300 tgggtaaaaacatttccttagttttctggagtcctaacagaagcatggccagatcaagca 359
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 576 tgggtaaaaacatttccttagttttctggagtcctcacagaagcatggccagatcaagca 517
Query: 360 gtacattagaaagttcgcctgg----gtattgagatatatttttcctatgc-tttttttt 414
||||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||
Sbjct: 516 gtacattagaaagtt----tggttgtgtattgagatatattcttcctatgcttttttttt 461
Query: 415 ttcatatacgagataaaacaaaggaaagaacaaagtttagaagatcaaaacattttttgt 474
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 460 ttcatatacaagataaaacaaaggaaagaacaaggtttagaagatcaaaacattttttgt 401
Query: 475 gggatctagcttaaatacatggctattttagttgaaacttggaaagtcagtatttccaaa 534
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 400 gggatctagcttaaatacatggttattttagttgaaacttggaaagtcagcatttccaaa 341
Query: 535 acaatgttatccaacccacagaatgcaaattgccaccataaaagtaggcagatttatcat 594
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 340 acaatgttatccgacccacagaatgtaaattgccaccataaaagtaggcagatttatcat 281
Query: 595 atgtgatatcaggttggatgtagagaaatttctacatgactgaagttttatctggaatca 654
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 280 atgtgatatcaggttggatgtagagaaatttctacatgactgaagttttatcaggaatca 221
Query: 655 ttatctgtcgaagcattg 672
|||||||| | |||||||
Sbjct: 220 ttatctgttggagcattg 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1070
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1060
Effective search space: 701720
Effective search space used: 701720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_n20.g1 MSMg01no135_n20.g1 CHROMAT_FILE:
MSMg01no135_n20.g1 PHD_FILE: MSMg01no135_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:05 2005
(652 letters)
>mm_chr1_64366955_64368005
Length = 1051
Score = 1149 bits (594), Expect = 0.0
Identities = 636/652 (97%), Gaps = 8/652 (1%)
Strand = Plus / Plus
Query: 4 ccccctcctctctctctctctctttctcacacacacacacacacacacacacacactgac 63
||||| |||||||||||||| | | ||||||||||||||||||||||||||||| |||
Sbjct: 205 ccccc-cctctctctctctcac--acacacacacacacacacacacacacacacacagac 261
Query: 64 atggttatattctcttggttatattcaaggactggggcaaggagaaagttaccatcaatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atggttatattctcttggttatattcaaggactggggcaaggagaaagttaccatcaatg 321
Query: 124 tagttagagagaatgacaaccagatggagccctggggacccacactttattagataaaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tagttagagagaatgacaaccagatggagccctggggacccacactttattagataaaaa 381
Query: 184 tcccaattctttcttctcttaaagaggttgcacagcaaaagttacaccattctttggaca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcccaattctttcttctcttaaagaggttgcacagcaaaagttacaccattctttggaca 441
Query: 244 actttattagaacccataagatccaccaccactgtcccccaacggaaaagcctacaagtc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 actttattagaacccataagatccaccaccactgtcccccaacggaaaagcctacaagtc 501
Query: 304 attgtgtcataaaaattaaattttaacctataatccaggcatcgagtttcctctagctac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 attgtgtcataaaaattaaattttaacctataatccaggcatcgagtttcctctagctac 561
Query: 364 acatccctactcattgaaaatgactttggtttggcattattagtacaaaagaactt---a 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 562 acatccctactcattgaaaatgactttggtttggcattattagtacaaaagagcttttaa 621
Query: 421 aaaaaaaaagaaagaaagaaagaaaaagaaaaacatttcaagctgatacatcattttcaa 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaaaaaaa-gaaagaaagaaagaaaaagaaaaacatttcaagctgatacatcattttcaa 680
Query: 481 tatactctctgtgtaaagttcccatttttcagaggttatttggattattttaatctgtgt 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tataccctctgtgtaaagttcccatttttcagaggttatttggattattttaatctgtgt 740
Query: 541 tgtgctaagatgaattcttttttgtatcttcaaacttctttctcttgctttgatggtgtg 600
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 741 tgtgctaagatgaatttttttttgtatcttcaatcttctttctcttgctttgatggtgtg 800
Query: 601 gtttttttttccctctacctttatctttatttaaaagcaaacttttaagtcc 652
||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtttttttt-ccctctacctttatctttatttaaaagcaaacttttaagtcc 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1051
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1041
Effective search space: 668322
Effective search space used: 668322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
