BAC Information

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BAC

Clone NameMSMg01-135O01
Chromosome1 (Build37)
Map Location 89,878,887 - 89,879,336
singlet/doubletsinglet
Overlap geneUsp40
Upstream gene4930429A22Rik, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag
Downstream geneLOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135O01.T7 (MSMg01no135_o01.b1)MSMg01-135O01.TJ (MSMg01no135_o01.g1)
ACCAG342224AG342225
length720718
length of high quality
(start - end)
611 (68 - 678)450 (75 - 524)
definitionCHROMAT_FILE: MSMg01no135_o01.b1 PHD_FILE: MSMg01no135_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:06 2005CHROMAT_FILE: MSMg01no135_o01.g1 PHD_FILE: MSMg01no135_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGCGG
AATTCAGGTTCTCGGGACAGAGTTTCTCTTTGGAATTCAGGTTCCGGGGA
TAGAGTTTCTCTTTGGAATGCTGGGAAGGTCCTGGAGACAAAGTCTCGTG
ACTGTTCTGGGCCAGCATGGACAGATTTACCCCCAAGGAAGCATATATTA
AAATGAGCTAAAATGGTAAAATTGTATGGTATCCTATTATATCACAAATG
TTACATAAAATTTCTCTTTAAAAATTATTTTGTCAGGTACGGTCATGCAT
GCCTTTAATCTAAGCACCTGTGAGCTAGAGACAGGTATATCTCTGAGGTC
AAGACCACTTAGAGTGCAGATCTTGATCTAGAATAGCCAGGACTATACAG
AGATACCCAGTCTCAAAAACAAAACAAAACAAAACAAAACAAAACAAAAT
GAAACAATATATAAGGAGGTGTGCACATCTATGCTGAGAACCTGAAGTGG
TAAAATTTCTTTGCAATGCATGTCAAAAACCTTTAGAGGCCAGGGATGTT
GGTACATGGCTTTGATCCCAGCATTCAGAAGGCAGAAGCAGGATGATCTC
TGTGTGTTCAAGGCTAACCTGGTCTACATAGTGAGTTCCAGGACTACACT
GAGAAACCCTATCTCAACCCTGGTCCCAAAATTACAAAAAATAAAAACAA
AAAATATGTTGCAAATGGAT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATCTGAAGTACTTAGTCTCAGCGACT
GCCTCATTCCAGCCTAAGCTTGTTCTGCCTAAGGGGACAAGATTGCTACC
AGGCTTTGAGTCAACTGAGAGGAGCGGAGATCAGCCTGTCACTTAGGATT
TCAGCCTGGAAAACAAACACTGGGAAAGATCTTAACAATCTGGAAAGACC
ACAGGAGCCTCGTGGACATCAGGATGGTGTTTGGAATCCACCTCTGAATA
TGTGGGCAGACATCCAGAATTCTTCTATAGCTAGAGACAGTCAATGTATG
CAGTGTCCATGGAAACAACTTTCTCTTAGAATTCATGGCACAGGTCCCGC
TGAATGTGTGCTGTATTGAAAAGCCAAAGTAAATCATTTGGGCAGGCAGA
AGAAAAAGATGTTACTGAGATAGAGTGGAGAACTTACACGCATGGTAAGG
TGAATGGTTTTGTTTGTTTGTTTGTTTCGCNCCCCTTCCCTCCCTCTTTT
TTTCTCCCTTCTTTCTTTCCTCCCCCCCCCTTTTTTTTTCCTCCCCCTTC
CCTTCACCCTTCCCCCTTTTCTTCTTCTTTTTTCTCTTTCCCCCTTTTTT
TTTTTTCTCCCCCCCTTTCTCCCTCCCTCCCCCCTTTGCCCCTTTTCTCC
TTTCCCCCCCTCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_o01.g1 MSMg01no135_o01.g1 CHROMAT_FILE:
MSMg01no135_o01.g1 PHD_FILE: MSMg01no135_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:06 2005
         (450 letters)



>mm_chr1_89878687_89879536
          Length = 850

 Score =  832 bits (430), Expect = 0.0
 Identities = 445/450 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgaagtacttagtctcagcgactgcctcattccagcctaagcttgttctgcctaagg 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 650 atctgaagtacttagtctcagcgactgcctcgttccagcctaagcttgttctgcctaagg 591

                                                                       
Query: 61  ggacaagattgctaccaggctttgagtcaactgagaggagcggagatcagcctgtcactt 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 590 ggacaagattgctaccaggctttgagttaactgagaggagcggagatcagcctgtcactt 531

                                                                       
Query: 121 aggatttcagcctggaaaacaaacactgggaaagatcttaacaatctggaaagaccacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aggatttcagcctggaaaacaaacactgggaaagatcttaacaatctggaaagaccacag 471

                                                                       
Query: 181 gagcctcgtggacatcaggatggtgtttggaatccacctctgaatatgtgggcagacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gagcctcgtggacatcaggatggtgtttggaatccacctctgaatatgtgggcagacatc 411

                                                                       
Query: 241 cagaattcttctatagctagagacagtcaatgtatgcagtgtccatggaaacaactttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cagaattcttctatagctagagacagtcaatgtatgcagtgtccatggaaacaactttct 351

                                                                       
Query: 301 cttagaattcatggcacaggtcccgctgaatgtgtgctgtattgaaaagccaaagtaaat 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 350 cttagaattcatggcacaggtctcgctgaatgtgtgctgtattgaaaagccaaagtaaat 291

                                                                       
Query: 361 catttgggcaggcagaagaaaaagatgttactgagatagagtggagaacttacacgcatg 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 290 catttgggcaggcagaagaaaaagatgttactgaggtagagtggagaacttacacgcatg 231

                                         
Query: 421 gtaaggtgaatggttttgtttgtttgtttg 450
            |||||||||||||||||||||||||||||
Sbjct: 230 ataaggtgaatggttttgtttgtttgtttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)