XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTTATCTTCTCTTCTCACTAGCTGTGCTAGTTTTGGGTTGAAAGGTTTC
AAAAGAATTCCAAGATAAAGATTTCTGTAGCTTGCTGGTAGCTAGTTGTC
AAAAATCACCTCTCAACTTTTCCTTTTTTGGATTCTGTAGTTGCCAGACA
CAAATCCTACATGCTTGTTCAGATACATAATTTAATTGAAAATAATTAAT
TTAGATAAAAATAAAAATAACTCACATTATATGTACTCACTGATAAGTGA
ATATTAGCCCAGAAACTTAGAATACCCAAGATAGAAAATACAATTTGCGA
AACACTTGAAACTCAAGAAGAACGAAGACCAAAATGTGGAGACTTTGCCC
CTTCATAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAA
GTTTGAAGCTGAGATGAAAGGATGGACTATCTAGAGCCTGCCATACCTGG
GGATCCATCCCGTAATCAGCCTCCAAATGCTGACACCATTGCATACACTA
GCAAGATTTTGCTGAAAGGACCCTTATATAGCTGTCTCTTGTGAGACTAT
GCTGGGTCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGTATTGGATA
GATCACAGAGCCCCCAATGGAGGATCTAGAGAAAGTACCGAAGGAGCTAA
AGGAATCTGCA

TGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACCCAAGAAGAGTAGACAGCAGGAAATAATCAAA
CTCAGGGGCTAAATCAACCAAGTGGAAAGGAGAAGAACTATTCAAAGAAT
CAACCAAATGGGGAGCTGGTTTTTTGAGAAAATCAACAAGATAGATAAAC
CCTTAGCCAGACTCACTAAAGTGCACAGAGAAAGCATTCTAATTAACAAA
ATCAGAAATGAAAAGGGAGACATAACAACAGAGCCTGAAGAAATCCAAAA
CACCATCGGATCCTTCTACAAAAGCTATACTCAACAAAACTGGAGAACCT
GGATGATATGAACAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATC
AAGATCAGGATAATGATCTAAACACTCCTATATCCCCTAAAGAAATAGAA
GCAGTCATTAATACTCTCCTAAACAAAAAAAGCCCAGCACCAGATGGGTT
TAGTGCAGAGTTCTATCAGAACTTCAAAGAAGATCTAATCCCAGTTCTTC
ATAAACTATTCCACAAAATAGAAACAGAAGGTACTCTACCCAACTCATTC
TATGAAGCCACAACTACTCTGATACCTAAACCACAAAAAGACCCAACAAA
GATAGAGGACTTGAGAACAATTTCCCTTAAGAATATCTATGCAAAAATAC
TCAGTAAA

Query= MSMg01no135_p02.b1 MSMg01no135_p02.b1 CHROMAT_FILE:
MSMg01no135_p02.b1 PHD_FILE: MSMg01no135_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:10 2005
         (671 letters)



>mm_chr1_109056374_109057444
          Length = 1071

 Score = 1230 bits (636), Expect = 0.0
 Identities = 660/668 (98%), Gaps = 2/668 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttatcttctcttctcactagctgtgctagttttgggttgaaaggtttcaaaa 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttatcttttcttctcactagctgtgctagttttgggttgaaaggtttcaaaa 264

                                                                       
Query: 65  gaattccaagataaagatttctgtagcttgctggtagctagttgtcaaaaatcacctctc 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 gaattccaagataaagatttctgtagcttgctgttagctagttgtcaaaaatcacctctc 324

                                                                       
Query: 125 aacttttccttttttggattctgtagttgccagacacaaatcctacatgcttgttcagat 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 aacttttccttttttggattctgtagttgccagacacaaatcctacatgcttgtccagat 384

                                                                       
Query: 185 acataatttaattgaaaataattaatttagataaaaataaaaataactcacattatatgt 244
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 385 acataatttaattgaaaataattaatttagataaaaatcaaaataactcacattatatgt 444

                                                                       
Query: 245 actcactgataagtgaatattagcccagaaacttagaatacccaagatagaaaatacaat 304
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actcactgataagtggatattagcccagaaacttagaatacccaagatagaaaatacaat 504

                                                                       
Query: 305 ttgcgaaacacttgaaactcaagaagaacgaagaccaaaatgtggagactttgccccttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgcgaaacacttgaaactcaagaagaacgaagaccaaaatgtggagactttgccccttc 564

                                                                       
Query: 365 atagaattgggaacaaaacacccatggaaggagttacagagacaaagtttgaagctgaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atagaattgggaacaaaacacccatggaaggagttacagagacaaagtttgaagctgaga 624

                                                                       
Query: 425 tgaaaggatggactatctagagcctgccatacctggggatccatcccgtaatcagcctcc 484
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cgaaaggatggactatctagagcctgccatacctggggatccatcccgtaatcagcctcc 684

                                                                       
Query: 485 aaatgctgacaccattgcatacactagcaagattttgctgaaaggacccttatatagctg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaatgctgacaccattgcatacactagcaagattttgctgaaaggacccttatatagctg 744

                                                                       
Query: 545 tctcttgtgagactatgctgggtcctagcaaacacagaagtggatgctcacagtcagtat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tctcttgtgagactatgctgggtcctagcaaacacagaagtggatgctcacagtcagtat 804

                                                                       
Query: 605 tggatagatcacagagcccccaatggaggatctagagaaagta-ccgaaggagctaaagg 663
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 805 tggatagatcacagagcccccaatggaggatctagagaaagtatcc-aaggagctaaagg 863

                   
Query: 664 aatctgca 671
           ||||||||
Sbjct: 864 aatctgca 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)