Query= MSMg01no136_f17.b1 MSMg01no136_f17.b1 CHROMAT_FILE:
MSMg01no136_f17.b1 PHD_FILE: MSMg01no136_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:43 2005
(654 letters)
>mm_chr1_79673702_79674755
Length = 1054
Score = 984 bits (509), Expect = 0.0
Identities = 568/605 (93%), Gaps = 29/605 (4%)
Strand = Plus / Minus
Query: 1 gaatagccagcagacagagatagcgatctgcctttggctaggcaccctttttcttttcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 gaatagccagcagacagagatagcgatctgcctttggctaggcaccctttttcttttcta 938
Query: 61 aagacaaacatttagagtgtgataaaagactaccagtatatagggatcaactaaattaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 aagacaaacatttagagtgtgataaaagactaccagtatatagggatcaactaaattaag 878
Query: 121 ataccgctaagcctcttgtgtaaagataaaggtagaaatgggatcattgggctattctgt 180
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 ataccactaagcctcttatgtaaagataaaggtagaaatgggatcattgggctattctgt 818
Query: 181 aataatgtcacattcttactggtttgcaatgtctatactaaaaattatagagggtcaaac 240
|||||||||||||| ||||||||||||||||||||||
Sbjct: 817 aataatgtcacatttttactggtttgcaatgtctata----------------------- 781
Query: 241 cattctcagtggtatgtgtgaagctgtgtcttaagagagctggtgttatctacagacaat 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 780 ----ctcagtggtatgtgtgaagctatgtcttaagagagctggtgttatctacagacaat 725
Query: 301 ggacaaagctgatctatgagcggctccatcttggg-ttgtgaacacacccctgcaaaagt 359
||||||||||||||||||||||||||||||||||| ||| |||||||| | || ||||||
Sbjct: 724 ggacaaagctgatctatgagcggctccatcttgggtttg-gaacacactcttgtaaaagt 666
Query: 360 gaaaacaactcaagagtttgtgtattaccttcttgttgattgatttctagggacaagtat 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 665 gaaaacaactcaagagtttgtgtattaccttcttgttgatcgatttctagggacaagtat 606
Query: 420 aacccgacagaagtgaaccgcttttggatgctgtaaagctgtgcgcatgtgtgtgcgttt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aacccgacagaagtgaaccgcttttggatgctgtaaagctgtgcgcatgtgtgtgcgttt 546
Query: 480 gtgatgtctacatgaacacacatgcttagatattagcttatacaaatatgttgacgctct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gtgatgtctacatgaacacacatgcttagatattagcttatacaaatatgttgacgctct 486
Query: 540 gttcccatctaggtacttctcaaatcttaagatacatttaaggggctggagacatggctc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gttcccatctaggtacttctcaaatcttaagatacatttaaggggctggagacatggctc 426
Query: 600 agtgg 604
|||||
Sbjct: 425 agtgg 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_f17.g1 MSMg01no136_f17.g1 CHROMAT_FILE:
MSMg01no136_f17.g1 PHD_FILE: MSMg01no136_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:43 2005
(637 letters)
>mm_chr1_79544817_79545853
Length = 1037
Score = 1062 bits (549), Expect = 0.0
Identities = 608/641 (94%), Gaps = 23/641 (3%)
Strand = Plus / Plus
Query: 1 agcaacagccagagcaagccagatcatagcactaggctggttgtgtgcacggtgcacact 60
||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||
Sbjct: 201 agcaacagccagagcaagccagagcatagcactaggctggttgtgtgcacagtgtacact 260
Query: 61 ttgcttgaactaacacatcgctagctctttagctgacagtttggaagcctcagtgtaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcttgaactaacacatcgctagctctttagctgacagtttggaagcctcagtgtaaac 320
Query: 121 actcagacgtaaagacacttgttccaagaaaccaggttggtaacatacagaaaactacac 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 actcagacgtaaagacacttgttccaagaaaccaggttggtgacatacagaaaactacac 380
Query: 181 atatataagtgttctatcaaaacagtggcaccagattcactgtaagaatttgacatggtt 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatataaatgttctatcaaaacagtggcaccagattcactgtaagaatttgacatggtt 440
Query: 241 atatttaatatactaaccccatgactgatgacaagaggtgcttcagatcccccaaaactc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatttaatatactaaccccatgactgatgacaagaggtgcttcagatcccccaaaactc 500
Query: 301 tgttgtcatagttagggtttctattgctgtgatgaaaccccatgaccaaaagcatgttgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttgtcatagttagggtttctattgctgtgatgaaaccccatgaccaaaagcatgttgg 560
Query: 361 gggaaaaaa-ggctttatttggcttacacttccgtgtctcatcatcatcatca---ccat 416
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 gggaaaaaaaggctttatttggcttacacttccgtgtctcatcatcatcatcattaccat 620
Query: 417 caaagatagttggagcaggaactcaagagaagaacaggaagcaggaactaaagcaaaaaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaagatagttggagcaggaactcaagagaagaacaggaagcaggaactaaagcaaaaaa 680
Query: 477 catggcatagtaccaaatgctatttataggcttgctacttgtggctcagcctgctttcat 536
||||||| ||| || |||||||||||||| |||||| |||||
Sbjct: 681 catggcacagttcctaatgctatttatagccttgct-------------------ttcat 721
Query: 537 aaagaatccaaggcctgcagcccaggggtggcatggcccatagtaagctgggccctccca 596
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 722 aaagaatccaaggcctgcagcccaggggtggcatggcccacagtaagctgggccctccca 781
Query: 597 catcaatcactaattaagaaaattccccacagtcttgtcca 637
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 catcaatcactaattaagaaaattccccacagtcttgtcca 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
