Query= MSMg01no136_h11.b1 MSMg01no136_h11.b1 CHROMAT_FILE:
MSMg01no136_h11.b1 PHD_FILE: MSMg01no136_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:51 2005
(577 letters)
>mm_chr1_31232983_31233959
Length = 977
Score = 946 bits (489), Expect = 0.0
Identities = 559/599 (93%), Gaps = 29/599 (4%)
Strand = Plus / Plus
Query: 4 ggaattcatcattcactgcctttgtaagaagtctacatataaacgcaccctgaagccatt 63
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 204 ggaattcatcattcactgcctttgtaagaagtctacatataaatgcaccctgaagccatt 263
Query: 64 gctgaagggagtgtggatgccacagctgatttatgtaagaaacagttgacatgaccgacg 123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctgaagggagtgtggatgccacggctgatttatgtaagaaacagttgacatgaccgacg 323
Query: 124 aaggggaccttgcacaggaggtaggaagctaagaatcaaaatagtatttcccaaaatatc 183
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaggggacctcgcacaggaggtaggaagctaagaatcaaaatagtatttcccaaaatatc 383
Query: 184 gacagtgaaggttttgatgactgcaacttttctgagcatcagtgggaatgagggcatggt 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 384 gacagtgaaggttttgatgactgcaacttttctgagcatcagtgggaatgagggcacggt 443
Query: 244 gagttgacgtgtatgctttcgggaagtttgtgaagaagtgtcctgtttcgcacagtcagt 303
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggttgacgtgtatgctttcgggaagtttgtgaagaagtgtcctgtttcgcacagtcagt 503
Query: 304 ttttaacaactgaacaccttggagcttgcatctagtgaagtgtgcttagtttgagcaatc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttttaacaactgaacaccttggagcttgcatctagtgaagtgtgcttagtttgagcaatc 563
Query: 364 acttacagtaacttcattaggcaccagggtttagaagaataaacacaccataacatttta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 564 acttacagtaacttcattaggcaccagggtttagaagaataaacacaccataaaatttta 623
Query: 424 tttcaatcttggttactact-a---------ctgtgtgtctcaaagcttattttgtcaca 473
|||||||||||||||||| | | |||||||||| ||||||||||||||||||
Sbjct: 624 tttcaatcttggttactaatgagagaatagtctgtgtgtcttaaagcttattttgtcaca 683
Query: 474 ttcttagtctttgtaagaatggctttggggttaaatgattaaagg--------------- 518
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttcttagtctttgtaagaatggctttggggttaaatgattaaaggggttaaatgattaaa 743
Query: 519 --tgagaagtaactgtgtgtgt--ttgtttgtgtatgtgagtgtgtgagtgtgtgtgtg 573
|||||||||||||||||||| |||| ||||||||||| |||||| |||||||||||
Sbjct: 744 ggtgagaagtaactgtgtgtgtgtttgtgtgtgtatgtgaatgtgtgtgtgtgtgtgtg 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_h11.g1 MSMg01no136_h11.g1 CHROMAT_FILE:
MSMg01no136_h11.g1 PHD_FILE: MSMg01no136_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:52 2005
(631 letters)
>mm_chr1_31429213_31430243
Length = 1031
Score = 741 bits (383), Expect = 0.0
Identities = 402/409 (98%), Gaps = 2/409 (0%)
Strand = Plus / Minus
Query: 1 atagggatcagtggccagacagatgaggtaagtgagcaatctctagtattggtgagagat 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 atagggatcagtggctagacagatgaggtaagtgagcaatctctagtattggtgagagat 348
Query: 61 catgcatataaaacaaactgaagaactgaaacagactaggtaagtaagcaaacttcagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 catgcatataaaacaaactgaagaactgaaacagactaggtaagtaagcaaacttcagta 288
Query: 121 ttaatgagagatcaagatcatgtatataaaacaagctgaagaactattgagaaagacatc 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 287 ttaatgagagatcgagatcatgtatataaaacaagctgaagaactattgagaaggacatc 228
Query: 181 agatgtcaacatgacaacatctgacctacacacacacacacacacacacaaacacacaca 240
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 227 agatgtcaacatgacaacatctgacctacacacacacacacacacaca--aacacacaca 170
Query: 241 ttcattaattaaataaaaatacacttgttgtgagtctgtgatggttagtgttgtctcttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ttcattaattaaataaaaatacacttgttgtgagtctgtgatggttagtgttgtctcttg 110
Query: 301 acaggctgtcaaatcacctaggagttaggctttagacacacatttgagggatttcacttg 360
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 109 acagactgtcaaatcacctaggagttaggctttagacacacctttgagggatttcacttg 50
Query: 361 gactgaggttagccactgagactctgtgagggtttatcttgatgacttt 409
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 gactgaggttagccactgagactctgtgagggtttatcttgatgacttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
