NNNNNCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGAGGA
GCCGCGGAATTCCTGCTGGCAAGGCAGCACGAGCTTGGGTGGTACAGTGC
TTGCCTACCGTGTGCAAAATTGTGGGGTCAATAACTGGCAGCATATAAAA
ACAGACAGGGTAGGACAAGTCTGGAATCTCAGCAGGCTGATGATTGGAGG
CTCAAGGTCATCCTCAGCTGCTCGATAAGTTCAAGGCCAACCTGGGCTAC
CTGAACCCCTGTCTCAAATAAATAAAATGAAACAACAAAAAAAGGGATGT
AGGATGGCTCAGTAGGTGGAGGCACTGGCTGCCATGCCTGACAGCCAGGC
CCACTCGGTAAAAGGAAAGGACTGATTCACAAACACTATAGCACAGATAG
ATAAATATAAGAATTACTTTCTTAAAAATTTTAAAGAAATCCCAAGAATG
TGACCCTAGGAAACTATAAGGATTTATTTATCCAGCTAGCTAACCTTCTG
TTTATCAAGTATATGAATACTTTTGACTATTTTTTTTTATTTTGATTTGG
CTTGGTTCAGTTTGTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCC
TGGACCTCATGTGGTAGACCAGGCTGGCCTCGAACTCAGAGACCTGCATG
TCTCTGGCTCTGCCAAGTGCTGGGATTAAAAATGTATACTACCAGTGCCC
GGCACTTTTGA

TTTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTCTGTTCCAGTCTATTTGG
AGTTCTGTAGGCTTCTTGTATGTTCATGGGCATCTCTTTCTTTAGATTTG
GGAAGTTTTCTTCAATAATTTTGTTGAAGATGTTTGCTGGTCCTTTGAGT
TGAAAATCTTCATTCTCATCCACTCCTATTATTCGTAGGTTTGGTCTTCT
CATTGTGTCCTGGATTTCCTGGATGTTTTGAGTTAGGATCTTTTTGCATT
TTCCATTTTCTTTGATTGCTGTGGCTATGTTCTCTATGGAATCTTCTGCA
CCTGAGATTCTCTCTCCCATCTCTTGTATTCTGTTGCTGATGCTGGCATC
TATGGTTCCAGATTTCTTTCCTAGGGTTTCTATCTCCAGCTTTGCCTCAC
TTTGGGTTTTCTTTAGTGTCTATTTCCCCTTTTAGGTATAGTATGGTTTT
GTTCATTTCCATCACCTGTTTGGGTGTGTTTTCCTGTTTTTCTATAAGGA
CTTCTACCTGTTTGGTTGTGTTTTCCTGTTTTTCTTTAAAGACTTGTAAC
TCTTTAGCAGTGTTCTCCTGTATTTCTTTAAGTGAGTTATTAAATTCCTT
CTTTATGTCCTCTACCATCATCATGAGATATGCTCTTAAATCCAGGTCTA
CCTTTA

Query= MSMg01no136_h12.b1 MSMg01no136_h12.b1 CHROMAT_FILE:
MSMg01no136_h12.b1 PHD_FILE: MSMg01no136_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:52 2005
         (604 letters)



>mm_chr1_85303799_85304807
          Length = 1009

 Score = 1042 bits (539), Expect = 0.0
 Identities = 587/605 (97%), Gaps = 6/605 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgctggcaaggcagcacgagcttgggtggtacagtgcttgcctaccgtgtgca 64
           ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattcctgctgggaaggcagcacgagcttgggtagtacagtgcttgcctaccgtgtgca 264

                                                                       
Query: 65  aaattgtggggtcaataactggcagcatataaaaacagacagggtaggacaagtctggaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 aaattgtggggtcaataactggcagcatataaaaacagacagggtaggacaagtctgtaa 324

                                                                       
Query: 125 tctcagcaggctgatgattggaggctcaaggtcatcctcagctgctcgataagttcaagg 184
           ||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct: 325 tctcagcaggctgatgattgggggttcaaggtcatcctcagctgcacgataagttcaagg 384

                                                                       
Query: 185 ccaacctgggctacctgaacccctgtctcaaataaataaaatgaaacaacaaaaaaaggg 244
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccaacgtgggctacctgaacccctgtctcaaataaataaaatgaaacaacaaaaaaaggg 444

                                                                       
Query: 245 atgtaggatggctcagtaggtggaggcactggctgccatgcctgacagccaggcccactc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgtaggatggctcagtaggtggaggcactggctgccatgcctgacagccaggcccactc 504

                                                                       
Query: 305 ggtaaaaggaaaggactgattcacaaacactatagcacaga----tagataaatataaga 360
           |||||||||||||||||||||| ||||||||||||||||||    |||||||||||||||
Sbjct: 505 ggtaaaaggaaaggactgattcgcaaacactatagcacagacagatagataaatataaga 564

                                                                       
Query: 361 attactttcttaaaaattttaaagaaatcccaagaatgtgaccctaggaaactataagga 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 565 attactttcttaaaaattttaaagaaatcccaagaatgtgaccctaggaaacgataagga 624

                                                                       
Query: 421 tttatttatccagctagctaaccttctgtttatcaagtatatgaatacttttgactattt 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttatttatccagctagctagccttctgtttatcaagtatatgaatacttttgactattt 684

                                                                       
Query: 481 tttttt-attttgatttggcttggttcagtttgtcaagacagggtttctctgtgtagccc 539
           |||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 685 tttttttattttgatttagcttggttcagttt-tcaagacagggtttctctgtgtagccc 743

                                                                       
Query: 540 tggctgtcctggacctcatgtggtagaccaggctggcctcgaactcagagacctgcatgt 599
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tggctgtcctggacctcacgtggtagaccaggctggcctcgaactcagagacctgcatgt 803

                
Query: 600 ctctg 604
           |||||
Sbjct: 804 ctctg 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1009
Length adjustment: 10
Effective length of query: 594
Effective length of database: 999
Effective search space:   593406
Effective search space used:   593406
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)