BAC Information

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BAC

Clone NameMSMg01-136J10
Chromosome1 (Build37)
Map Location 106,618,755 - 106,619,106
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383546, LOC100041134
Downstream geneCdh20, Rnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136J10.T7 (MSMg01no136_j10.b1)MSMg01-136J10.TJ (MSMg01no136_j10.g1)
ACCAG342749AG342750
length712726
length of high quality
(start - end)
636 (75 - 710)355 (81 - 435)
definitionCHROMAT_FILE: MSMg01no136_j10.b1 PHD_FILE: MSMg01no136_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:01 2005CHROMAT_FILE: MSMg01no136_j10.g1 PHD_FILE: MSMg01no136_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCATCATAATTTGCGGCGCTAATACGATCACATTCAGAGAGGATC
CGCGGAATTCAAGGTTGCTAGAACTACATAGTGAGATCTTGACTCAAAAA
TAAAATAAAAACCAATCACAAAAGAAGTCACTTGATATGTACTCACTGAT
AAGTGGATGTTAACCCAGAAATCTAGAATACCCAAGATACAATTTGCAAA
ACACAAGAAAATCAAGAAGAAGAAAGACCAATGCATAGATACTTCATTCC
TCCCTAGAATAGGGAACAAAATATCCATGGAAGGAGTTACAGAGACAAAT
TTTGGAGCTAAGTCTAAAGGATGTATCATCCAGAGACTGCCCCACTCAGG
GGTCCATCCCATAATCAGCCGCCAAAGGCAGACACTATTGCATATGCAGG
CAAGATTATGCTGAAAGGACCCTGATATAGCTGTCTCTTGTGAGGCTATG
CCTGTGCCTGGCAAATACAGAAGTGGATGCTCACAGTCATCTATAGGATG
GAACACAGGGCCCCCAATGTAGGAGCTAGAGAAAGTACCCAAGGAGCTGA
AGGTGTCTGCAACCCTATAGGTGGATCAGCAATATGAACTAATCAGTACA
CCCAGAGCTCTTGTCTCTAGCTGCATATGTAGGAGAAGATGGCCTAGTCG
GTCATCATTGAGAAGAGAGGGCCTTCATTCTTGCAAACTTTATATGCCCC
AGTACAGGGGAT
GCCCCCGCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTGGTTGTATGTTTG
ATTTAGTAATTTGGCATTCCGTTCTTTAGACTGAGTCAGCACAGAAAATG
CAGCACGTGATGTAGGTTGGTAAAGACTATGGATAAGCTGGTTATGTAGA
CAAGGTTCCAAAACCATGAGTCTGGAGCTAGGCTACTGGGTGCAGGGGTG
TGAGTGGACAGAAGACAGGATGGGAGAGGAAAGCAACATCTTACCAGTCA
GAGATGGCTTTTGAAGAGAGCAGGTTTGAAGGCTATGGATCTATTCCTAT
GCCTGTGGATAATGTGATGGCTACAGGCAGTGTGGTGGGACAAAGGGTGT
TGATAGTGTGGTGTGTGGAGAGATGGGAAAAGCATTATTTCTTTCCTCCC
CTTTCTTTTGCCCCCCACTTCTCCCCCCCCATTTTCGGGGCCCCGTTTCA
TTCGTCCGCATTCCATTTTTTCTCATTTTTTCCTCATTTTTCTCCCCTTT
TTCTTTTTCTCCCTCTTTACGCTCTTCCTCTTTTTTAACACTTCTTTTTC
CTCCTCGGGGTTTTTCTTTTTCTTGTTTTGCGGTAGCTATCATGTCTTTT
TTCAGTTTGTCGTATATTTGTTCCTACATGCCGCTTACATTCCCCTCTTC
TCTCCCCTCCCCCTTTCCTTCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_j10.g1 MSMg01no136_j10.g1 CHROMAT_FILE:
MSMg01no136_j10.g1 PHD_FILE: MSMg01no136_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:01 2005
         (355 letters)



>mm_chr1_106618555_106619309
          Length = 755

 Score =  665 bits (344), Expect = 0.0
 Identities = 350/352 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctttggttgtatgtttgatttagtaatttggcattccgttctttagactgagtcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tttctttggttgtatgtttgatttagtaatttggcattccgttctttagactgagtcagc 493

                                                                       
Query: 61  acagaaaatgcagcacgtgatgtaggttggtaaagactatggataagctggttatgtaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 acagaaaatgcagcacgtgatgtaggttggtaaagactatggataagctggttatgtaga 433

                                                                       
Query: 121 caaggttccaaaaccatgagtctggagctaggctactgggtgcaggggtgtgagtggaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 caaggttccaaaaccatgagtctggagctaggctactgggtgcaggggtgtgagtggaca 373

                                                                       
Query: 181 gaagacaggatgggagaggaaagcaacatcttaccagtcagagatggcttttgaagagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gaagacaggatgggagaggaaagcaacatcttaccagtcagagatggcttttgaagagag 313

                                                                       
Query: 241 caggtttgaaggctatggatctattcctatgcctgtggataatgtgatggctacaggcag 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 caggtttgaaagctatggatctattcctatgcctgtggataatgtgatggctacaggcag 253

                                                               
Query: 301 tgtggtgggacaaagggtgttgatagtgtggtgtgtggagagatgggaaaag 352
           |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 252 tgtggtgggacaaagggtattgatagtgtggtgtgtggagagatgggaaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)