BAC Information

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BAC

Clone NameMSMg01-136N08
Chromosome1 (Build37)
Map Location 87,887,478 - 87,887,807
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55
Downstream geneSpata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136N08.T7 (MSMg01no136_n08.b1)MSMg01-136N08.TJ (MSMg01no136_n08.g1)
ACCAG342928AG342929
length711704
length of high quality
(start - end)
371 (53 - 423)343 (76 - 418)
definitionCHROMAT_FILE: MSMg01no136_n08.b1 PHD_FILE: MSMg01no136_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:20 2005CHROMAT_FILE: MSMg01no136_n08.g1 PHD_FILE: MSMg01no136_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCCCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGA
GGATCCGCGGAATTCTTTGCTTTCGTAACAGTTTGAGAAGTCTAGCATGT
GAATAAGAAAGCTGTCAAAGCTTTTCAGATTGACTTATAAAGAAATTTTA
TTTATTTACTTAGTATAAGTATATATATGTTGTGTAACCTACAGTGTGCA
TGTGCATACCACATGCTTATCAGTGTTCTGAGACCAGAAGATGTCATAAC
TCCCAGAGCTAGAGTCACATGGAGTTGGGAGCCTCCTGACATGAGTGCTA
GGAACCTAGCTTAGGTTCTCTGAGAGGCAGCTGGGAAGTTTCTTAATGTT
CTGAGCCATCTTACTAGACCCTACAGATTAATTTCCAGCCTTTGTTTTGC
TTATTGCGGTCTCATCAGTAGATTCCCCAATCACTTTAGTGAATTACCAC
CAGCCTTTAGAAGGAGGGAGTACAGTGGAACAAAAAACAGAATGCACAGT
AATAAGAGAAATTAATGAAAGTATACAGTATAATTTTACCAATTAGCAAT
AAGTACTGTTTGGTGATAATTGGTTGGTTGGTTGGCTCGCCACTCACTCT
TTTTCTTTTCCCCTAACCTCCAACATCCCTTCCTCATCTCATTCCCCACC
CTTCCTCTCTTTTTCTTCTCCCCCTTTTCTTTCCCCCTTCCTTGCCGCTC
TTTTTCCCCTC
CCCCCCCTCGATGAAGTGGGTAGCCTGGCGGCCGCCTTTTCAAATCATTT
AGGTGACCTATAGATTTCCTCGCGGAATTCTACATGGTTTCTTAAGGAGA
CTGTCTCCCTGCTGTTCCAGTTTTCAGAGACTTTTTATTTATTTATTTAT
TTATTTATTTATTTATTTATTTATTTATTCATTTGCTTCTGTCTGGCACA
AATTATATGGATACAGGCATGCAGTAGAAAAGTAAGAAATACTAAAAAAT
TTCAAAGGGCCAGATTTTTATACGGTCTGTAGAGGAGTGATTGTCTGGTC
TGTAATTTTGACTTTCCTCCTAGTATTTTTGTTTTCTTTTTCTTCTTGTT
TTTGTTCTTGTTATTTTGTAATTAGGGTCTCAATATGCTAGCCTCAAACT
AATGATCCTCCTGCCTCCCCCACCCATGGATATTTCTCGAATTCCCAGCA
TCCTCTTCTGCATCAGACCATCCTGGCTGGTGGCTACCGCTCCTTATCTT
CTACCCTGCATATTTTTATCTCTTGCTTCCTGTGCGTTTCCCTGTCTTGT
TCTGACTTTGCTAACAATCTGATAATTCAGAGCTTGTACCGTGACCTTGA
TGGTTGCCCAGAGCCCATGTCGACCCATCGCTGGGGAAACATGCGCCATT
CTGCGAACTGGATCTTTCCCTCCCCGTTGCCTTCCCATTGCTTTCCTTAT
TTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_n08.g1 MSMg01no136_n08.g1 CHROMAT_FILE:
MSMg01no136_n08.g1 PHD_FILE: MSMg01no136_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:20 2005
         (343 letters)



>mm_chr1_87887231_87887973
          Length = 743

 Score =  596 bits (308), Expect = e-175
 Identities = 328/342 (95%), Gaps = 12/342 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctacatggtttcttaaggagactgtctccctgctgttccagttttcagagactttt 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 577 aattctacatggtttcttaaggagactgtctccctgctgttccggttttcagagactttt 518

                                                                       
Query: 61  tatttatttatttatttatttatttatttatttatttatttattcatttgcttctgtctg 120
           |||||||||||||||||||||||||||||||||            |||||||||||||||
Sbjct: 517 tatttatttatttatttatttatttatttattt------------atttgcttctgtctg 470

                                                                       
Query: 121 gcacaaattatatggatacaggcatgcagtagaaaagtaagaaatactaaaaaatttcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gcacaaattatatggatacaggcatgcagtagaaaagtaagaaatactaaaaaatttcaa 410

                                                                       
Query: 181 agggccagatttttatacggtctgtagaggagtgattgtctggtctgtaattttgacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 agggccagatttttatacggtctgtagaggagtgattgtctggtctgtaattttgacttt 350

                                                                       
Query: 241 cctcctagtatttttgttttctttttcttcttgtttttgttcttgttattttgtaattag 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cctcctagcatttttgttttctttttcttcttgtttttgttcttgttattttgtaattag 290

                                                     
Query: 301 ggtctcaatatgctagcctcaaactaatgatcctcctgcctc 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ggtctcaatatgctagcctcaaactaatgatcctcctgcctc 248


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)