BAC Information

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BAC

Clone NameMSMg01-137C01
Chromosome1 (Build37)
Map Location 78,787,082 - 78,787,262
singlet/doubletsinglet
Overlap geneLOC620521
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b
Downstream geneKcne4, LOC100039260, EG545332, Scg2, Ap1s3, Wdfy1, Mrpl44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137C01.T7 (MSMg01no137_c01.b1)MSMg01-137C01.TJ (MSMg01no137_c01.g1)
ACCAG343140AG343141
length741749
length of high quality
(start - end)
268 (46 - 313)183 (70 - 252)
definitionCHROMAT_FILE: MSMg01no137_c01.b1 PHD_FILE: MSMg01no137_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:43 2005CHROMAT_FILE: MSMg01no137_c01.g1 PHD_FILE: MSMg01no137_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGAGATCCGCGG
AATTCCATGATAGTCACGGCTACACAGTGAAACCCTGTCTTGAAAAACCT
AAACAAACAAATGAATAAAACCTCACAGTTCTAGAAGGTTACCATCCATA
GCCGTTGTGGCAGGCAGCATCCATGGAGCAGTACCTAAGAGTCCACAGTG
GTCTACAAGCACAACTGTGAATGGCCAGTGCATTTGAAACCTCAAAGCCA
CCCCCACAGTGACACACCTAATCCAACAAGGCCACATCTAATCTTCCCCA
CACAGTTCTACTAACTGTCGACCTATTTAAACATATGAGCCTGCGGGGAC
ATTCAGATCATTACTCACGCTCTCTTGCTGAATCTACTGTAGCTGGAGTT
CCTGTTTCAGTTACTCTAGCTTGTTTGTTCTAGGTATCCCAGCCACATTG
ATTATTGGTTGAGGAACTTTGATAGGAAACCTTGTTACTGATTTGATCTA
ATAAAATCTAATACTTTTGAGATTTAGATTGCTTTTTTTACCCTTTGTTT
CTGTTGAACTTGATACTTGCTACTATTTGTTACTCTACCTAACCTTGTTG
TCTTCTGTTACTTATGGATAATGCCCAATTCCCCTCCACCACATTGTGTA
GCCACATTCGGACCCCAAACTCTCTCTACCAACTCCTCATTCTTTCAACG
CTCTATCTACACCGGATGATATTTACCATCAACCCCTCTTG
ATAATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCTGGAATTCACGTAGTCTCTTCAGTAGTTTCCTACTTA
TGATTGACAGCATTTCCATAGACTCTTATCTTCTGATCAATGCCTGCAGC
AGCCTCTGCAATCAATACCTGTTGATAAAGGGCAACTAATATGCCCTCGG
AGTGAGGCGTCTCCACCCTTGACAGGAGAAGGTATCTGCAGCCTGTACCG
TCTACCAGAGCATTCATGCCAGTCCTCTGAGTGAGTAAGCACTAGTTCTT
GGAGACGGAATAAAATGTTTTTGTTTAAACATTTACATTTTTAGATTATT
TATCTTTTTTTTATAAGTGAGAATATGTCACCACCCTACACAATGCATAG
TGTTTTAAAAGTGTCAATGCTATGTATGCCCAAATCCTCCTTGATATTAT
ATTATAGATTAGCCTACACCTGTCTATCCGAGAATAATTGTAATAGGGAA
TTATTTTGTTATTTTCTTATTTGTGCATTTTATAATCTCCGTTCTCTAAG
ATGGATTTATATTCCTTCTTTTGATCTACTTTTTATATTGTAATCTTTTT
AATAATTGCCCAAAATAATATTTTTAAAATATATATTACCATTTCCATTG
TTTCAACCTTCACTCTTCTGCTCTCTTTCATACGTCAAGCAATGTCTAAT
ACCTTAATTCTATCAGTTTCTCATTGTTTTTTGTATGTACAATTGCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_c01.g1 MSMg01no137_c01.g1 CHROMAT_FILE:
MSMg01no137_c01.g1 PHD_FILE: MSMg01no137_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:43 2005
         (183 letters)



>mm_chr1_78786882_78787464
          Length = 583

 Score =  335 bits (173), Expect = 1e-96
 Identities = 179/181 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacgtagtctcttcagtagtttcctacttatgattgacagcatttccatagactcttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacgtagtctcttcagtagtttcctacttatgattgacagcatttccatagactcttat 322

                                                                       
Query: 61  cttctgatcaatgcctgcagcagcctctgcaatcaatacctgttgataaagggcaactaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctgatcaatgcctgcagcagcctctgcaatcaatacctgttgataaagggcaactaa 262

                                                                       
Query: 121 tatgccctcggagtgaggcgtctccacccttgacaggagaaggtatctgcagcctgtacc 180
           ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 tatgccctcggagtgagacgtctccacccttgacagaagaaggtatctgcagcctgtacc 202

            
Query: 181 g 181
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)