Query= MSMg01no137_g16.b1 MSMg01no137_g16.b1 CHROMAT_FILE:
MSMg01no137_g16.b1 PHD_FILE: MSMg01no137_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:06 2005
(270 letters)
>mm_chr1_160584161_160584836
Length = 676
Score = 435 bits (225), Expect = e-126
Identities = 247/257 (96%), Gaps = 6/257 (2%)
Strand = Plus / Minus
Query: 20 cttaattttgag-aaaaaaaaaattacttcaaatgtgaagtaatatgccaacata----- 73
|||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 476 cttaattttgagtaaaaaaaaagttacttcaaatgtgaagtaatatgccaacgtatttct 417
Query: 74 tttctttcacctttaagcaaattttcctaggtcactatctaggtgaattgtgttgaaata 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tttctttcacctttaagcaaattttcctaggtcactatctaggtgaattgtgttgaaata 357
Query: 134 taccaccagggggcactgtaacgtgagtgctctataaggcattaacttccctgccctcca 193
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 356 taccaccagggggcactgtaacgtgagtcctctgtaaggcattaacttccctgccctcca 297
Query: 194 gctggccatcattaaagcttgtaattgctgtgaacaagaggggctgctccccttgttgct 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gctggccatcattaaagcttgtaattgctgtgaacaagaggggctgctccccttgttgct 237
Query: 254 gtcttctggcaatgcca 270
|||||||||||||||||
Sbjct: 236 gtcttctggcaatgcca 220
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 676
Length adjustment: 9
Effective length of query: 261
Effective length of database: 667
Effective search space: 174087
Effective search space used: 174087
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no137_g16.g1 MSMg01no137_g16.g1 CHROMAT_FILE:
MSMg01no137_g16.g1 PHD_FILE: MSMg01no137_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:06 2005
(239 letters)
>mm_chr1_160395402_160396040
Length = 639
Score = 455 bits (235), Expect = e-132
Identities = 238/239 (99%)
Strand = Plus / Plus
Query: 1 ggcccagcagggcacgttttcttatgtgattttcactctgggatgcaggatcattccact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcccagcagggcacgttttcttatgtgattttcactctgggatgcaggatcattccact 260
Query: 61 tcagagctccaaagcagatggtccctgtggtaagaggtgcagcccacaggccaacgcagc 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 tcagagctccaaagcagatggtccctgtggtaagaggtgcagcccgcaggccaacgcagc 320
Query: 121 ccaaggcccccatcatttttctgactgacctcatttcctccacatctcttgactttgtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaggcccccatcatttttctgactgacctcatttcctccacatctcttgactttgtcc 380
Query: 181 tttctctctacttcctcctcctctgtctgcccctcatcttccttcacagatggccaaga 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctctctacttcctcctcctctgtctgcccctcatcttccttcacagatggccaaga 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
