Query= MSMg01no137_j06.b1 MSMg01no137_j06.b1 CHROMAT_FILE:
MSMg01no137_j06.b1 PHD_FILE: MSMg01no137_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:19 2005
(275 letters)
>mm_chr1_95245035_95245709
Length = 675
Score = 499 bits (258), Expect = e-146
Identities = 270/274 (98%), Gaps = 2/274 (0%)
Strand = Plus / Plus
Query: 2 gaattcagccttgtttg-cacagttcttctatgttaagctggtcccctgcagcatgtttc 60
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcagccttgtagggc-cagttcttctatgttaagctggtcccctgcagcatgtttc 260
Query: 61 tctttgaggcctgcaatgaagaagcaagctgacttctaatagtctgctaatgtttggagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttgaggcctgcaatgaagaagcaagctgacttctaatagtctgctaatgtttggagg 320
Query: 121 aggcagacatgggctgacgtgtaaggatatgtgatgtgtaagggtgtgtaagctggttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcagacatgggctgacgtgtaaggatatgtgatgtgtaagggtgtgtaagctggttcc 380
Query: 181 actgcagatgcaagggcttgtttgccctaaggaaagaactacaggagaaaggaggctagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgcagatgcaagggcttgtttgccctaaggaaagaactacaggagaaaggaggctagg 440
Query: 241 gaaaagttgtaataattgataagaagttcaagga 274
||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaagttgtaataattgataagaagttcaagga 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no137_j06.g1 MSMg01no137_j06.g1 CHROMAT_FILE:
MSMg01no137_j06.g1 PHD_FILE: MSMg01no137_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:19 2005
(631 letters)
>mm_chr1_95390518_95391545
Length = 1028
Score = 1152 bits (596), Expect = 0.0
Identities = 622/632 (98%), Gaps = 6/632 (0%)
Strand = Plus / Minus
Query: 1 aaggcagtcaggagctacctgacaaaaatgctgggaactgaagtcaggtcctgtgtaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 aaggcagtcaggagctacctgacaaaaatgctgggaactgaagtcaggtcctgtgtaaga 693
Query: 61 acagcaagttctcataatacctgggccatccctccaaccaccataaagaatagttaatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 acagcaagttctcataatacctgggccatccctccaaccaccataaagaatagttaatga 633
Query: 121 agtgttttttttttcctattgcggtaaccgttcatgtcctttgaaatgtttttagctgtc 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 agtg-tttttttttcctattgcggtaaccgttcatgtcctttgaaatgtttttagctgtc 574
Query: 181 ataaaattatgtttactttcttctaaaaaattttttttttactttaggcgtaggatatat 240
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 573 ataaaattatgtttactttcttctaaaaaaatttttttttactttaggtgtaggatatat 514
Query: 241 ttcaagttaatttgcaagtacaatttgcaaactagcctacatgtaccccatggaggacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttcaagttaatttgcaagtacaatttgcaaactagcctacatgtaccccatggaggacag 454
Query: 301 tatttgttcaaaacattccaactgtataattttgcttttggggtctcagtt-aaaaaaaa 359
| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 453 tctttgttcaaaacatcccaactgtataattttgcttttggggtctcagttaaaaaaaaa 394
Query: 360 aaatccaaaattctgtttttatttttgttttaacagtatactggatagtttgactataac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 393 aaatccaaaattctgtttttatttttgttttaacagtatactggatagtttgact---ac 337
Query: 420 actgtaaatggtcaaatttctctttctcctcctctgtcaaggtctcattatgtagcccag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 actgtaaatggtcaaatttctctttctcctcctctgtcaaggtctcattatgtagcccag 277
Query: 480 gcttgtctccaccttagatccatccctcttctacaagcttcccaagcactggtttacaga 539
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 276 gcttgtctccaccttagatccatccctcttctacaagctt-ccaagcactggtttacaga 218
Query: 540 catgcaggatcacactttttgatgtctttaataagggatatttctgacttagtaagtatt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 catgcaggatcacactttttgatgtctttaataagggatatttctgacttagtaagtatt 158
Query: 600 taagcagtttgattctccaaggcttgttcata 631
||||||||||||||||||||||||||||||||
Sbjct: 157 taagcagtttgattctccaaggcttgttcata 126
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1028
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1018
Effective search space: 632178
Effective search space used: 632178
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
