BAC Information

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BAC

Clone NameMSMg01-137L02
Chromosome1 (Build37)
Map Location 73,478,309 - 73,647,570
singlet/doubletdoublet
Overlap geneLOC672208, LOC100043291
Upstream geneMarch4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc
Downstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137L02.T7 (MSMg01no137_l02.b1)MSMg01-137L02.TJ (MSMg01no137_l02.g1)
ACCAG343552AG343553
length726703
length of high quality
(start - end)		457 (45 - 501)633 (65 - 697)
definitionCHROMAT_FILE: MSMg01no137_l02.b1 PHD_FILE: MSMg01no137_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:28 2005CHROMAT_FILE: MSMg01no137_l02.g1 PHD_FILE: MSMg01no137_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,647,185 - 73,647,570)(73,478,309 - 73,478,941)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAAGAAAGTCCCAGCCTGAATCAAAGGTAGGTGAGGAAGCCAGCA
GTGTGGTGGGAATGCAACAGTTAGGTCTCTGGGTGCAACCCACTACATCA
TGCCACTGGTTGCTAAGAGTGACTGCTCTGCTTTGTGTGATGACCATCCT
TGGGCCTCCACACCCAACCTGTCATTTGAAGGAAAGAGATGGATGTGCAC
GCAGGCAGAGCAGCTGCAGTCTATCACGACTTTGCTTGCGATTTGTGTCA
TCTTTAGAAGTTACATCATTTCTCTCAGATTTAGTTTTCTCATCTATCAA
ATAGACTTGTCTTGAGATTATGTCAGATGGTTTTTGGAAAGCATCCACCC
ACATGCCTGTCATGGAATGGATAGTGAGGAGTGGCAAAAAGCACAGTCAG
GTGACAGATGCCCTGAGACTGAGACTCCTACCTTGCATTTGCTATGGGAA
TGCAAGGCACGTTCTTCAACTTCTTGTGTCTTAGCTTCCTCATCTATAGT
GTGAGAATAATAAATACACCAATCTTCATGGAACAGTCAAGTTAAAATGT
CACAGAATATGTCACGTGAATAGAGAATCACCTTTTAAGCGATCCAAACT
GTCAAGATAATGGCACTTGCCTGTCACTTCAGTGCACTGGATAGAGATGG
ACCACCTACTTTTCAAATCTAGCCTA

ATGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACATGGAAAGAAAAATGTAAAAGAAATTAAAGTAGG
TATCAGAGCTTCTTTCTGGGCTCTCAATAATTGCAGGTGGCTAGTCACAT
GCTTGAAGGGTGGGGTACGGTTAGCTGAACTGGTAAAGATTCTTCATCTT
ATGCTCTTGCTAAATCTGTACAGGTCCCGTGTCTGCTGATGCCCAGAGCT
GGCTTCGCAGCAGCCTTTTCCATCTCTGCACAGCAGGAGCCTCTCATGGA
CACACTTAGCTTTGTATTCCCTTGGCTAGACAGAGCCACCTCCTGAGAGT
CCCCAGAGCACCCACTAGGGTGCTTTATCTTCTGAATGAGACTTCTGAAG
TTCCTCCCCAACCAGGAAGCCTGGCTGAAGCCATGCATTGCCCTTCTGTT
TCTCTGCATTATTCTGATGTCCCACACTTGCTTCGTCATCTGGATTCTAT
TTCTATCTTTCTCTCGGTCCATTCCTGGTTACCCATGCCCTTACTCACTG
CAGCACATGCAGGCAGCTCCTCATCACCATGTGAGCCATGTAATATCTTG
ATTCAGTCCCTTGTCTCCTTAGTTTTCAGTTACTAAAATTACTAAAACGT
AGCCATGCTTCATTAGCCTAAAATGTTCATTATTCATACTTTAAATGTTA
TAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_l02.b1 MSMg01no137_l02.b1 CHROMAT_FILE:
MSMg01no137_l02.b1 PHD_FILE: MSMg01no137_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:28 2005
         (457 letters)



>mm_chr1_73647185_73648041
          Length = 857

 Score =  723 bits (374), Expect = 0.0
 Identities = 383/386 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaagaaagtcccagcctgaatcaaaggtaggtgaggaagccagcagtgtggtg 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaattccaaagaaagtccaagcctgaatcaaaggtaggtgaggaagccagcagtgtggtg 327

                                                                       
Query: 65  ggaatgcaacagttaggtctctgggtgcaacccactacatcatgccactggttgctaaga 124
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 326 ggaatgcaacagttaggtctctgggtgcaacccactacatcgtgccactggttgctaaga 267

                                                                       
Query: 125 gtgactgctctgctttgtgtgatgaccatccttgggcctccacacccaacctgtcatttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtgactgctctgctttgtgtgatgaccatccttgggcctccacacccaacctgtcatttg 207

                                                                       
Query: 185 aaggaaagagatggatgtgcacgcaggcagagcagctgcagtctatcacgactttgcttg 244
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 206 aaggaaagagatggatgtgcacgcaggcagagcagctgcaggctatcacgactttgcttg 147

                                                                       
Query: 245 cgatttgtgtcatctttagaagttacatcatttctctcagatttagttttctcatctatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 cgatttgtgtcatctttagaagttacatcatttctctcagatttagttttctcatctatc 87

                                                                       
Query: 305 aaatagacttgtcttgagattatgtcagatggtttttggaaagcatccacccacatgcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  aaatagacttgtcttgagattatgtcagatggtttttggaaagcatccacccacatgcct 27

                                     
Query: 365 gtcatggaatggatagtgaggagtgg 390
           ||||||||||||||||||||||||||
Sbjct: 26  gtcatggaatggatagtgaggagtgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no137_l02.g1 MSMg01no137_l02.g1 CHROMAT_FILE:
MSMg01no137_l02.g1 PHD_FILE: MSMg01no137_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:28 2005
         (633 letters)



>mm_chr1_73478109_73479141
          Length = 1033

 Score = 1208 bits (625), Expect = 0.0
 Identities = 631/633 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatggaaagaaaaatgtaaaagaaattaaagtaggtatcagagcttctttctgggctct 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatggaaaggaaaatgtaaaagaaattaaagtaggtatcagagcttctttctgggctct 260

                                                                       
Query: 61  caataattgcaggtggctagtcacatgcttgaagggtggggtacggttagctgaactggt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 caataattgcaggtggctagtcacatgcttgaagggtggggtacggttggctgaactggt 320

                                                                       
Query: 121 aaagattcttcatcttatgctcttgctaaatctgtacaggtcccgtgtctgctgatgccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagattcttcatcttatgctcttgctaaatctgtacaggtcccgtgtctgctgatgccc 380

                                                                       
Query: 181 agagctggcttcgcagcagccttttccatctctgcacagcaggagcctctcatggacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagctggcttcgcagcagccttttccatctctgcacagcaggagcctctcatggacaca 440

                                                                       
Query: 241 cttagctttgtattcccttggctagacagagccacctcctgagagtccccagagcaccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttagctttgtattcccttggctagacagagccacctcctgagagtccccagagcaccca 500

                                                                       
Query: 301 ctagggtgctttatcttctgaatgagacttctgaagttcctccccaaccaggaagcctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctagggtgctttatcttctgaatgagacttctgaagttcctccccaaccaggaagcctgg 560

                                                                       
Query: 361 ctgaagccatgcattgcccttctgtttctctgcattattctgatgtcccacacttgcttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaagccatgcattgcccttctgtttctctgcattattctgatgtcccacacttgcttc 620

                                                                       
Query: 421 gtcatctggattctatttctatctttctctcggtccattcctggttacccatgcccttac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcatctggattctatttctatctttctctcggtccattcctggttacccatgcccttac 680

                                                                       
Query: 481 tcactgcagcacatgcaggcagctcctcatcaccatgtgagccatgtaatatcttgattc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcactgcagcacatgcaggcagctcctcatcaccatgtgagccatgtaatatcttgattc 740

                                                                       
Query: 541 agtcccttgtctccttagttttcagttactaaaattactaaaacgtagccatgcttcatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtcccttgtctccttagttttcagttactaaaattactaaaacgtagccatgcttcatt 800

                                            
Query: 601 agcctaaaatgttcattattcatactttaaatg 633
           |||||||||||||||||||||||||||||||||
Sbjct: 801 agcctaaaatgttcattattcatactttaaatg 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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